View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14960_low_13 (Length: 208)
Name: NF14960_low_13
Description: NF14960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14960_low_13 |
 | |
|
| [»] scaffold0536 (2 HSPs) |
| |
|
Alignment Details
Target: scaffold0536 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 5680 - 5887
Alignment:
| Q |
1 |
caatgctcaaatccttggcaaatccatccctttaaaccaacacctccgtattcacaccgttccatttccttcccatgaagttggcctccctgatggcgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5680 |
caatgctcaaatccttggcaaatccatccctttaaaccaacacctccgtattcacaccgttccatttccttcccatgaagttggcctccctgatggcgtc |
5779 |
T |
|
| Q |
101 |
gaaagcctctccgccgccaccgaccttgagaatcttcgcaagatctttcaagccaccactctcctccaacctcccatccaacacgtcgtggagcagcacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
5780 |
gaaagcctctccgccgccaccgacctcgagaatcttcgcaagatctttcaagccaccactctcctccaaccacccatccaacacttcgtggagcagcacc |
5879 |
T |
|
| Q |
201 |
caccggat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
5880 |
caccggat |
5887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 5 - 208
Target Start/End: Original strand, 9668 - 9871
Alignment:
| Q |
5 |
gctcaaatccttggcaaatccatccctttaaaccaacacctccgtattcacaccgttccatttccttcccatgaagttggcctccctgatggcgtcgaaa |
104 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||| || || || |||| |
|
|
| T |
9668 |
gctcaaatccttggcaaatctatccctttaaaccaacatctccgtattcacactgttccatttccttcccaagaagtaggcctccccgacggtgtagaaa |
9767 |
T |
|
| Q |
105 |
gcctctccgccgccaccgaccttgagaatcttcgcaagatctttcaagccaccactctcctccaacctcccatccaacacgtcgtggagcagcacccacc |
204 |
Q |
| |
|
| ||||| |||||||| ||| | | || | ||| ||||||||||| ||||||||||||| ||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
9768 |
gtctctctgccgccactgacttcaataacatggtcaaaatctttcaagctaccactctcctccgaccacccatccaacacttcgtggagcagcacccacc |
9867 |
T |
|
| Q |
205 |
ggat |
208 |
Q |
| |
|
|||| |
|
|
| T |
9868 |
ggat |
9871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 48911514 - 48911717
Alignment:
| Q |
1 |
caatgctcaaatccttggcaaatccatccctttaaaccaacacctccgtattcacaccgttccatttccttcccatgaagttggcctccctgatggcgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| |||||||||||||| || | ||| |||||||| ||||||||| |
|
|
| T |
48911514 |
caatgctcaaatccttggcaaatctattcctttaaaccaacaccttcgtattcacactgttccatttccttcacaagcagtaggcctccccgatggcgtc |
48911613 |
T |
|
| Q |
101 |
gaaagcctctccgccgccaccgaccttgagaatcttcgcaagatctttcaagccaccactctcctccaacctcccatccaacacgtcgtggagcagcacc |
200 |
Q |
| |
|
||| ||||| | || |||||||||| || || || ||| |||| || ||| ||||||| |||| ||| ||||||||||| ||||||||||||||| |
|
|
| T |
48911614 |
gaacccctcttcaccaccaccgacctcgacaacctcaccaaaatctatcgagcagccactctactccgaccaaccatccaacacttcgtggagcagcacc |
48911713 |
T |
|
| Q |
201 |
cacc |
204 |
Q |
| |
|
|||| |
|
|
| T |
48911714 |
cacc |
48911717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 48952197 - 48952137
Alignment:
| Q |
51 |
ttcacaccgttccatttccttcccatgaagttggcctccctgatggcgtcgaaagcctctc |
111 |
Q |
| |
|
|||| ||| ||| ||| |||||||| |||||||||||||| |||||| |||||| |||||| |
|
|
| T |
48952197 |
ttcaaacctttcaattcccttcccaagaagttggcctccccgatggcatcgaaaacctctc |
48952137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University