View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14960_low_9 (Length: 278)

Name: NF14960_low_9
Description: NF14960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14960_low_9
NF14960_low_9
[»] chr1 (3 HSPs)
chr1 (24-175)||(15374746-15374896)
chr1 (63-183)||(2129343-2129461)
chr1 (116-185)||(11927469-11927540)
[»] chr2 (2 HSPs)
chr2 (81-185)||(10928068-10928171)
chr2 (72-185)||(40140310-40140422)
[»] chr6 (2 HSPs)
chr6 (63-185)||(8564646-8564767)
chr6 (72-185)||(10041237-10041350)
[»] chr8 (1 HSPs)
chr8 (78-183)||(23842617-23842720)
[»] chr5 (1 HSPs)
chr5 (116-185)||(7778713-7778783)
[»] chr7 (1 HSPs)
chr7 (117-159)||(10024444-10024486)
[»] scaffold0642 (1 HSPs)
scaffold0642 (72-181)||(8222-8330)
[»] scaffold0345 (1 HSPs)
scaffold0345 (72-181)||(18135-18243)
[»] scaffold0105 (1 HSPs)
scaffold0105 (72-181)||(20739-20847)
[»] chr4 (1 HSPs)
chr4 (72-181)||(8194083-8194191)


Alignment Details
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 24 - 175
Target Start/End: Complemental strand, 15374896 - 15374746
Alignment:
Q  24 agaagacaagagcaccttcggggtgtaaacctagttgatataaccctccccttgttggcggacctaattaatttttatgaaaaaacaaattctgcaagga 123  Q
    ||||||||| || |||||||||||||||||||| ||||||||||||  ||||| ||||||||||||||||||||||||| |||| ||| || ||||||||    
T  15374896 agaagacaaaagtaccttcggggtgtaaacctaattgatataaccccgccctttttggcggacctaattaatttttatg-aaaaccaagttatgcaagga 15374798  T
Q  124 attgaattagatagcacataaaaagttcatttttttaaagtcactaacgtca 175  Q
    ||||||| ||   |||||||||| ||||||||||||||||||||||||||||    
T  15374797 attgaatcagggcgcacataaaatgttcatttttttaaagtcactaacgtca 15374746  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 63 - 183
Target Start/End: Original strand, 2129343 - 2129461
Alignment:
Q  63 ataaccctccccttgttggcggacctaattaatttttatgaaaaaacaaattctgcaaggaattgaattagatagcacataaaaagttcatttttttaaa 162  Q
    |||||||  ||||| |||||||||| |||||||||||||||||||| ||  |||||||| |||| |||||| |||||||| |||||||||||||||| ||    
T  2129343 ataacccaaccctttttggcggacccaattaatttttatgaaaaaa-aaggtctgcaagaaattaaattaggtagcacatgaaaagttcattttttt-aa 2129440  T
Q  163 gtcactaacgtcattgcaatt 183  Q
    ||||||| || ||||||||||    
T  2129441 gtcactatcgccattgcaatt 2129461  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 11927469 - 11927540
Alignment:
Q  116 tgcaaggaattgaattagatagcacataaaaagttcattttt--ttaaagtcactaacgtcattgcaattcc 185  Q
    ||||||||||||||| || |||||||  |||| |||||||||    ||| ||||||||||||||||||||||    
T  11927469 tgcaaggaattgaatcaggtagcacaagaaaaattcatttttaaaaaaaatcactaacgtcattgcaattcc 11927540  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 185
Target Start/End: Original strand, 10928068 - 10928171
Alignment:
Q  81 gcggacctaattaatttttatgaaaaaacaaattctgcaaggaattgaattagatagcacataaaaagttcattttttt-aaagtcactaacgtcattgc 179  Q
    ||||||||||||||||||||||||||||  || |||||||| |||||||| || |||||||| |||||||||||||||| ||||||| ||| | ||||||    
T  10928068 gcggacctaattaatttttatgaaaaaa--aagtctgcaagaaattgaatcaggtagcacatgaaaagttcatttttttaaaagtcattaatgccattgc 10928165  T
Q  180 aattcc 185  Q
    ||||||    
T  10928166 aattcc 10928171  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 185
Target Start/End: Complemental strand, 40140422 - 40140310
Alignment:
Q  72 cccttgttggcggacctaattaatttttatgaaaaaacaaattctgcaaggaattgaattagatagcacataaaaagttcatttttttaaagtcactaac 171  Q
    ||||| |||| || ||||||||||||||||||||||| ||| |  |||||||||||||| || || ||||| |||||||||||||||| |||||||| ||    
T  40140422 ccctttttggtgggcctaattaatttttatgaaaaaaaaaagttcgcaaggaattgaatcaggtaacacatgaaaagttcattttttt-aagtcacttac 40140324  T
Q  172 gtcattgcaattcc 185  Q
     ||||| |||||||    
T  40140323 atcattacaattcc 40140310  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 185
Target Start/End: Complemental strand, 8564767 - 8564646
Alignment:
Q  63 ataaccctccccttgttggcggacctaattaatttttatgaaaaaacaaattctgcaaggaattgaattagatagcacataaaaagttcatttttt-taa 161  Q
    |||||||| ||||| ||| ||| |||||| |||||| |||||||||  |  | ||||||||||||||| || |||||||  |||| ||||||||||  ||    
T  8564767 ataaccctgccctttttgacgggcctaataaattttaatgaaaaaa--aggtatgcaaggaattgaatcaggtagcacaagaaaaattcattttttaaaa 8564670  T
Q  162 agtcactaacgtcattgcaattcc 185  Q
    | ||||||||||||||||||||||    
T  8564669 aatcactaacgtcattgcaattcc 8564646  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 185
Target Start/End: Complemental strand, 10041350 - 10041237
Alignment:
Q  72 cccttgttggcggacctaattaatttttatgaaaaaacaaattctgcaaggaattgaattagatagcacataaaaagttca-tttttttaaagtcactaa 170  Q
    ||||| |||||||||||| |||||||||||||||||| |  | | |||||||||||||| |  |||||||| ||||  ||| ||||||||||||||| ||    
T  10041350 ccctttttggcggacctagttaatttttatgaaaaaataggtcc-gcaaggaattgaatcaagtagcacatgaaaaaatcattttttttaaagtcaccaa 10041252  T
Q  171 cgtcattgcaattcc 185  Q
    |  |||| |||||||    
T  10041251 caccatttcaattcc 10041237  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 183
Target Start/End: Original strand, 23842617 - 23842720
Alignment:
Q  78 ttggcggacctaattaatttttatgaaaaaacaaattctgcaaggaattgaattagatagcacataaaaagttcatttttttaaagtcactaacgtcatt 177  Q
    |||||| ||||||||||  |||||| ||||| ||  | |||||||| |||||| || |||||||| |||  || ||||||||||||||||||||||||||    
T  23842617 ttggcgtacctaattaaactttatgcaaaaa-aaggtatgcaagga-ttgaatcaggtagcacatgaaatatttatttttttaaagtcactaacgtcatt 23842714  T
Q  178 gcaatt 183  Q
    ||||||    
T  23842715 gcaatt 23842720  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 7778713 - 7778783
Alignment:
Q  116 tgcaaggaattgaattagatagcacataaaaagttcatttttt-taaagtcactaacgtcattgcaattcc 185  Q
    ||||||||||||||| || |||||||  |||| ||||||||||  ||| ||||||||||||||||||||||    
T  7778713 tgcaaggaattgaatcaggtagcacaagaaaaattcattttttaaaaaatcactaacgtcattgcaattcc 7778783  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 10024486 - 10024444
Alignment:
Q  117 gcaaggaattgaattagatagcacataaaaagttcattttttt 159  Q
    |||||||||||||| ||||||||||| |||||||| |||||||    
T  10024486 gcaaggaattgaatcagatagcacatgaaaagttctttttttt 10024444  T

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Target: scaffold0642 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 181
Target Start/End: Original strand, 8222 - 8330
Alignment:
Q  72 cccttgttggcggacctaattaatttttatgaaaaaacaaattctgcaaggaattgaattagatagcacataaaaagttcatttttttaaagtcactaac 171  Q
    ||||| ||||| ||| |||||||||||  |||||||| ||  ||| |||| |||||||| ||  | ||||| ||||||||||||| ||||||||| |||     
T  8222 ccctttttggcagacataattaattttcttgaaaaaa-aaggtctccaagaaattgaatcaggcaacacatgaaaagttcattttattaaagtcattaat 8320  T
Q  172 gtcattgcaa 181  Q
    | ||||||||    
T  8321 gccattgcaa 8330  T

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Target: scaffold0345 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 181
Target Start/End: Original strand, 18135 - 18243
Alignment:
Q  72 cccttgttggcggacctaattaatttttatgaaaaaacaaattctgcaaggaattgaattagatagcacataaaaagttcatttttttaaagtcactaac 171  Q
    ||||| ||||| ||| |||||||||||  |||||||| ||  ||| |||| |||||||| ||  | ||||| ||||||||||||| ||||||||| |||     
T  18135 ccctttttggcagacataattaattttcttgaaaaaa-aaggtctccaagaaattgaatcaggcaacacatgaaaagttcattttattaaagtcattaat 18233  T
Q  172 gtcattgcaa 181  Q
    | ||||||||    
T  18234 gccattgcaa 18243  T

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Target: scaffold0105 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 181
Target Start/End: Complemental strand, 20847 - 20739
Alignment:
Q  72 cccttgttggcggacctaattaatttttatgaaaaaacaaattctgcaaggaattgaattagatagcacataaaaagttcatttttttaaagtcactaac 171  Q
    ||||| ||||| ||| |||||||||||  |||||||| ||  ||| |||| |||||||| ||  | ||||| ||||||||||||| ||||||||| |||     
T  20847 ccctttttggcagacataattaattttcttgaaaaaa-aaggtctccaagaaattgaatcaggcaacacatgaaaagttcattttattaaagtcattaat 20749  T
Q  172 gtcattgcaa 181  Q
    | ||||||||    
T  20748 gccattgcaa 20739  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 181
Target Start/End: Complemental strand, 8194191 - 8194083
Alignment:
Q  72 cccttgttggcggacctaattaatttttatgaaaaaacaaattctgcaaggaattgaattagatagcacataaaaagttcatttttttaaagtcactaac 171  Q
    ||||| ||||| ||| |||||||||||  |||||||| ||  ||| |||| |||||||| ||  | ||||| ||||||||||||| ||||||||| |||     
T  8194191 ccctttttggcagacataattaattttcttgaaaaaa-aaggtctccaagaaattgaatcaggcaacacatgaaaagttcattttattaaagtcattaat 8194093  T
Q  172 gtcattgcaa 181  Q
    | ||||||||    
T  8194092 gccattgcaa 8194083  T

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