View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14961_high_1 (Length: 634)
Name: NF14961_high_1
Description: NF14961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14961_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 1 - 616
Target Start/End: Complemental strand, 29632629 - 29632014
Alignment:
| Q |
1 |
tattatttggtttgttagttttgattttaaagacgacgttttgatcatgtgtatgaaaagnnnnnnnnnnagggattatgaagtaggattatgcagtaga |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29632629 |
tattttttggtttgttagttttgattttaaagacgacgttttgatcatgtgtatgaaaagttttttttttagggattatgaagtaggattatgcagtaga |
29632530 |
T |
|
| Q |
101 |
gactactcattgttaaagtaaaagnnnnnnngtaatgtgctaattcagaattgctgcagcagaaaaagatatacagaataagaattgttgcatgatcgca |
200 |
Q |
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|||||||||| ||||||||||||| | |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29632529 |
gactactcatcgttaaagtaaaagaaaaaaagcaatgtgctaaatcagagttgctgcagcagaaaaagatatacagaataagaattgttgcatgatcgcg |
29632430 |
T |
|
| Q |
201 |
accgtttacacaactgctatttaaagccataagcatgggataatgaactaaactgaatagaaacatcaggggagagcacataaacatgctactatgtagg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29632429 |
accgtttacacaactgctatttaaagccataagcatgggataatgaactaaactgaatagaaacatcaggggagagcacataaacatgctactatgtagg |
29632330 |
T |
|
| Q |
301 |
aataattgttaaattaaatctttaaaacacaatctatcacaaccatgagttttacaaaatgttcaagtgtttgtttgactaacacaaagtttgtctctaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29632329 |
aataattgttaaattaaatctttaaaacacaatctattacaaccatgagttttacaaaatgttcaagtgtttgtttgactaacacaaagtttgtctctaa |
29632230 |
T |
|
| Q |
401 |
agataactttgaacaaacgcagataaaaataattaagttcaaggcgtacagcaagaaaatacaactatcacaaatagaggatttacaaatgagattcttg |
500 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
29632229 |
agataactttaaacaaacaaagataaaaataattaagttcaaggcgtacagcaagaaaatacaactatcacaaagagaggatttacaaatgagattcttg |
29632130 |
T |
|
| Q |
501 |
ttcgaagatgttcagaatatgcgctcttcttgattgatgtcaatatgtgctcttcttcgaatgaattgttcgccaagcttgaactactcatcttcaatat |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29632129 |
ttcgaagatgttcagaatatgcgctcttcttgattgatgtcaatatgtgctcttcttcgaatgaattgttagccaagcttgaactactcatcttcaatat |
29632030 |
T |
|
| Q |
601 |
ttgtttgtgttatctt |
616 |
Q |
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|||||||||||||||| |
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| T |
29632029 |
ttgtttgtgttatctt |
29632014 |
T |
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