View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14961_high_11 (Length: 351)
Name: NF14961_high_11
Description: NF14961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14961_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 37818500 - 37818163
Alignment:
| Q |
1 |
taaggccatattttgggaatgtgttaatttcatgtcaattcaagtgactgaactctcttttttgttgctatatataagtagtgtctgtttatttgaacat |
100 |
Q |
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| T |
37818500 |
taaggccatattttgggaatgtgttaatttcatgtcaattcaagtgactgaactctcttttttgttgctatatataagtagtgtctgtttatttgaacat |
37818401 |
T |
|
| Q |
101 |
at--gatattgttagattacatttgcaggagaattccaaattggggagaatatagaaccgttagatcctgaaacagttgatagcatagttcaatatggaa |
198 |
Q |
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| T |
37818400 |
atatgatattgttagattacatttgcaggagaattccaaattggggagaatatagaaccattagatcctgaaacagttgatagcatagttcaatatggaa |
37818301 |
T |
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| Q |
199 |
gatttggaaggtcaatgaatgtccaagctgttggttattcccttgtgtatagtcagctatatccttttgaaggacttcagaactatacttctggaattat |
298 |
Q |
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| T |
37818300 |
gatttggaaggtcaatgaatgtccaagctgttggttattcccttgtgtatagtcagctatatcctttcgaaggacttcagaactacacttctggaattat |
37818201 |
T |
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| Q |
299 |
acatcatgttcgtctcacaggtatattaacactttgac |
336 |
Q |
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| T |
37818200 |
acatcatgttcgtctcacaggtatattaacactttgac |
37818163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 101 - 336
Target Start/End: Complemental strand, 37810441 - 37810206
Alignment:
| Q |
101 |
atgatattgttagattacatttgcaggagaattccaaattggggagaatatagaaccgttagatcctgaaacagttgatagcatagttcaatatggaaga |
200 |
Q |
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| T |
37810441 |
atgacattgttgaattacatttgcaggagaattccaaattggggagaatatagaaccattagatcctgaaacagttggtagcatagttcaatatggaagg |
37810342 |
T |
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| Q |
201 |
tttggaaggtcaatgaatgtccaagctgttggttattcccttgtgtatagtcagctatatccttttgaaggacttcagaactatacttctggaattatac |
300 |
Q |
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| T |
37810341 |
tttggaaggtcaatgaatggccaagctgttggttattcccttgtgtatagtcagctatatccttttgaaggacttcagaactatacttctggaattatac |
37810242 |
T |
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| Q |
301 |
atcatgttcgtctcacaggtatattaacactttgac |
336 |
Q |
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| T |
37810241 |
atcatgttcgtctcacaggtatattaacactttgac |
37810206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 237 - 320
Target Start/End: Original strand, 19905358 - 19905441
Alignment:
| Q |
237 |
tcccttgtgtatagtcagctatatccttttgaaggacttcagaactatacttctggaattatacatcatgttcgtctcacaggt |
320 |
Q |
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| T |
19905358 |
tcccttgtgtacagccagctttatccttttgaaggtcttcagaattacacttctggaatcatccatcatgttcggctcacaggt |
19905441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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