View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14961_high_18 (Length: 258)
Name: NF14961_high_18
Description: NF14961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14961_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 238
Target Start/End: Complemental strand, 40578313 - 40578089
Alignment:
| Q |
14 |
aatatcactagagtaaaacatcacagcaactggacatgaataagtagtttgtaaaggcaatgaatttatacggcaatgaaaactaaatcaaaaaagctaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||| |||| |
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| T |
40578313 |
aatatcactagagtaaaacatcacagcaactggacatgaataagtagtttctaaaggcaatgaatttacacggcaatgaacactaaatcaaaaa-gctat |
40578215 |
T |
|
| Q |
114 |
ggaatcaaaagcaatatgtcttacgacaccagctatagcacatgaataatagggattaaagtagctagcaatcaaacaactatgaataatagtaaagaga |
213 |
Q |
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||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40578214 |
ggaatcaaaagcaatatgtcttacggcaccagcaatagcacatgaataatagggattaaagtagctagcaatcaaacaactatgaataatagtaaagaga |
40578115 |
T |
|
| Q |
214 |
ctcaatggaaattggat-aataaata |
238 |
Q |
| |
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||||||||||||||||| |||||||| |
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| T |
40578114 |
ctcaatggaaattggatgaataaata |
40578089 |
T |
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Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 14 - 238
Target Start/End: Original strand, 19804747 - 19804971
Alignment:
| Q |
14 |
aatatcactagagtaaaacatcacagcaactggacatgaataagtagtttgtaaaggcaatgaatttatacggcaatgaaaactaaatcaaaaaagctaa |
113 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||| |
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| T |
19804747 |
aatattactagagtaaaacatcacagcaactggacatgaataagtagtttgtaaaggcaatgaatttacacggcaatgaacactaaatcaaaa-agctaa |
19804845 |
T |
|
| Q |
114 |
ggaatcaaaagcaatatgtcttacgacaccagctatagcacatgaataatagggattaaagtagctagcaatcaaacaactatgaataatagtaaagaga |
213 |
Q |
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||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
19804846 |
ggaatcaaaagcaatatgtcttacggcaccagcaatagcacatgaataatagggattaaagtagctagcaataaaacaactaagaataatagtaaagaga |
19804945 |
T |
|
| Q |
214 |
ctcaatggaaattggat-aataaata |
238 |
Q |
| |
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||||||| ||||||||| |||||||| |
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| T |
19804946 |
ctcaatgtaaattggatgaataaata |
19804971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 14 - 238
Target Start/End: Original strand, 27775221 - 27775445
Alignment:
| Q |
14 |
aatatcactagagtaaaacatcacagcaactggacatgaataagtagtttgtaaaggcaatgaatttatacggcaatgaaaactaaatcaaaaaagctaa |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||| |
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| T |
27775221 |
aatattactagagtaaaacatcacagcaactggacatgaataagtagtttgtaaaggcaatgaatttacacggcaatgaacactaaatcaaaa-agctaa |
27775319 |
T |
|
| Q |
114 |
ggaatcaaaagcaatatgtcttacgacaccagctatagcacatgaataatagggattaaagtagctagcaatcaaacaactatgaataatagtaaagaga |
213 |
Q |
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|
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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|
| T |
27775320 |
ggaatcaaaagcaatatgtcttacggcaccagcaatagcacatgaataatagggattaaagtagctagcaataaaacaactaagaataatagtaaagaga |
27775419 |
T |
|
| Q |
214 |
ctcaatggaaattggat-aataaata |
238 |
Q |
| |
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||||||| ||||||||| |||||||| |
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|
| T |
27775420 |
ctcaatgtaaattggatgaataaata |
27775445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 129 - 230
Target Start/End: Original strand, 32879331 - 32879432
Alignment:
| Q |
129 |
atgtcttacgacaccagctatagcacatgaataatagggattaaagtagctagcaatcaaacaactatgaataatagtaaagagactcaatggaaattgg |
228 |
Q |
| |
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|||||||| | ||||||| ||| ||||||||||| | |||||||||||||||||||||||||||| |||||||| |||||||| ||| |||| |||||| |
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| T |
32879331 |
atgtcttatggcaccagcaataacacatgaataacaaggattaaagtagctagcaatcaaacaacaatgaataacagtaaagaaacttaatgagaattgg |
32879430 |
T |
|
| Q |
229 |
at |
230 |
Q |
| |
|
|| |
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|
| T |
32879431 |
at |
32879432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 146
Target Start/End: Original strand, 19312465 - 19312547
Alignment:
| Q |
65 |
taaaggcaatgaatttatacggcaatgaaaactaaatca--aaaaagctaaggaatcaaaagcaatatgtcttacgacaccagc |
146 |
Q |
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||||||||||||||| | ||||||| ||||||||||||| | ||||| |||| || ||||||||||||||||||| ||||||| |
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| T |
19312465 |
taaaggcaatgaattgacacggcaacgaaaactaaatcattataaagccaagg-attaaaagcaatatgtcttacggcaccagc |
19312547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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