View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14961_high_21 (Length: 244)
Name: NF14961_high_21
Description: NF14961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14961_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 34043825 - 34043624
Alignment:
| Q |
1 |
caaatgtttcttttccatcatctcttagggaaaaaccaatcacagcttcaataattagtataactatagtcacatatatgcatagacagcaaggattgat |
100 |
Q |
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| T |
34043825 |
caaatgtttcttttccatcgtctcttagggaaaaaccaaccacagcttcaataattagtataactatagtcacatatatgcatagacagcaaggattgat |
34043726 |
T |
|
| Q |
101 |
cctataactaacattaactcagtaatattactactttactatgtaaatttaacaattcaat-nnnnnnnnttgtacctaataggctaatacttcaatgca |
199 |
Q |
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| T |
34043725 |
cctataactaacattaactcagtaatattactactttactatgtaaatttaacaattcaataaaaaaaaattgtacctaataggctaatacttcaatgca |
34043626 |
T |
|
| Q |
200 |
gt |
201 |
Q |
| |
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|| |
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| T |
34043625 |
gt |
34043624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 4045696 - 4045739
Alignment:
| Q |
2 |
aaatgtttcttttccatcatctcttagggaaaaaccaatcacag |
45 |
Q |
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|||||||||||||||||| |||||||| ||||||||| |||||| |
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| T |
4045696 |
aaatgtttcttttccatcgtctcttagcgaaaaaccagtcacag |
4045739 |
T |
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