View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14961_high_27 (Length: 208)

Name: NF14961_high_27
Description: NF14961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14961_high_27
NF14961_high_27
[»] chr7 (6 HSPs)
chr7 (20-195)||(21098434-21098609)
chr7 (20-195)||(21108053-21108228)
chr7 (28-139)||(18658773-18658884)
chr7 (28-139)||(21111651-21111762)
chr7 (55-139)||(21130638-21130722)
chr7 (44-101)||(29213195-29213252)
[»] chr3 (10 HSPs)
chr3 (19-127)||(26744244-26744352)
chr3 (20-122)||(26698846-26698948)
chr3 (20-104)||(26713998-26714082)
chr3 (20-104)||(26734009-26734093)
chr3 (20-104)||(26737234-26737318)
chr3 (20-104)||(26751170-26751254)
chr3 (36-102)||(47212425-47212491)
chr3 (42-127)||(26690340-26690425)
chr3 (42-127)||(26731651-26731736)
chr3 (42-103)||(26694525-26694586)
[»] chr4 (1 HSPs)
chr4 (55-137)||(39132016-39132098)


Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 21098609 - 21098434
Alignment:
Q  20 actcgtaaaccaatagtctatattttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaagccttccaatgattcctacttcagctag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21098609 actcgtaaaccaatagtctatattttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaagccttccaatgattcctacttcagctag 21098510  T
Q  120 aaattcaccttcaccttgttgtgcattgtaaagtctctttattgcagcatgtcttccatcggataatatgcctttg 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21098509 aaattcaccttcaccttgttgtgcattgtaaagtctctttattgcagcatgtcttccatcagataatatgcctttg 21098434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 21108228 - 21108053
Alignment:
Q  20 actcgtaaaccaatagtctatattttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaagccttccaatgattcctacttcagctag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21108228 actcgtaaaccaatagtctatattttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaagccttccaatgattcctacttcagctag 21108129  T
Q  120 aaattcaccttcaccttgttgtgcattgtaaagtctctttattgcagcatgtcttccatcggataatatgcctttg 195  Q
    |||||||||||| |||||||| |||||||||||||| ||||  ||| ||||||||  ||| ||||||| |||||||    
T  21108128 aaattcaccttctccttgttgagcattgtaaagtctttttaccgcaacatgtctttgatcagataataggcctttg 21108053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 28 - 139
Target Start/End: Original strand, 18658773 - 18658884
Alignment:
Q  28 accaatagtctatattttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaagccttccaatgattcctacttcagctagaaattcac 127  Q
    ||||| |||||||  || || ||||| |||||||||||||| || ||||| |||||||| ||||||| ||||||||| | ||||||||| |||||||| |    
T  18658773 accaaaagtctatgcttaccttcagcacaatatccccacatatcaatcaagttcatgtggttaagccgtccaatgatgcttacttcagcaagaaattctc 18658872  T
Q  128 cttcaccttgtt 139  Q
    |||| |||||||    
T  18658873 cttctccttgtt 18658884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 28 - 139
Target Start/End: Original strand, 21111651 - 21111762
Alignment:
Q  28 accaatagtctatattttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaagccttccaatgattcctacttcagctagaaattcac 127  Q
    ||||| |||||||  || || ||||| ||||||||||||||||| ||||| |||||||| ||||||| ||||||||| | |||||| || |||||||| |    
T  21111651 accaaaagtctatgcttaccttcagcacaatatccccacatttctatcaagttcatgtggttaagccgtccaatgatacttacttcggcaagaaattctc 21111750  T
Q  128 cttcaccttgtt 139  Q
    |||| |||||||    
T  21111751 cttctccttgtt 21111762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 21130638 - 21130722
Alignment:
Q  55 caatatccccacatttcgatcaaattcatgtgattaagccttccaatgattcctacttcagctagaaattcaccttcaccttgtt 139  Q
    ||||||||||||||||| |||||||||||||| |||||| || ||||||| | ||||||||| ||||| || ||||| |||||||    
T  21130638 caatatccccacatttcaatcaaattcatgtggttaagcttttcaatgatgcttacttcagcaagaaactctccttctccttgtt 21130722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 29213195 - 29213252
Alignment:
Q  44 ttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaagccttccaat 101  Q
    ||||||| || ||||| ||||||| ||| |||||||||||||| |||||| |||||||    
T  29213195 ttccctctgcacaataaccccacaattcaatcaaattcatgtggttaagctttccaat 29213252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 26744244 - 26744352
Alignment:
Q  19 cactcgtaaaccaatagtctatattttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaagccttccaatgattcctacttcagcta 118  Q
    |||||||||||||| | ||||| |||||||||||| ||||| ||||||||  | || || |||||||| ||||||||||||||||| | ||||||||| |    
T  26744244 cactcgtaaaccaacaatctatgttttccctcagcacaatagccccacataccaattaagttcatgtggttaagccttccaatgatgcttacttcagcaa 26744343  T
Q  119 gaaattcac 127  Q
    |||| ||||    
T  26744344 gaaactcac 26744352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 26698846 - 26698948
Alignment:
Q  20 actcgtaaaccaatagtctatattttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaagccttccaatgattcctacttcagctag 119  Q
    |||| |||||||| | ||| | ||||||||| || ||||| ||||||||| | |||||||||||||||||||||||||||||||| |  |||||||| ||    
T  26698846 actcataaaccaacaatctgtgttttccctcggcacaataaccccacattcctatcaaattcatgtgattaagccttccaatgatgctaacttcagcaag 26698945  T
Q  120 aaa 122  Q
    |||    
T  26698946 aaa 26698948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 26713998 - 26714082
Alignment:
Q  20 actcgtaaaccaatagtctatattttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaagccttccaatgat 104  Q
    |||| |||||||| | | ||| |||||||||||| ||||| ||||||||| | |||||||||||||| |||||||||||||||||    
T  26713998 actcataaaccaacaatttatgttttccctcagcacaataaccccacattccaatcaaattcatgtggttaagccttccaatgat 26714082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 26734009 - 26734093
Alignment:
Q  20 actcgtaaaccaatagtctatattttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaagccttccaatgat 104  Q
    |||| |||||||| | ||| | ||||||||| || ||||| ||||||||| | ||||||||||||||||||||||||||||||||    
T  26734009 actcataaaccaacaatctgtgttttccctcggcacaataaccccacattcctatcaaattcatgtgattaagccttccaatgat 26734093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 26737234 - 26737318
Alignment:
Q  20 actcgtaaaccaatagtctatattttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaagccttccaatgat 104  Q
    |||| |||||||| | | ||| |||||||||||| ||||| ||||||||| | || ||||||||||| |||||||||||||||||    
T  26737234 actcataaaccaacaatttatgttttccctcagcacaataaccccacattccaattaaattcatgtggttaagccttccaatgat 26737318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 26751170 - 26751254
Alignment:
Q  20 actcgtaaaccaatagtctatattttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaagccttccaatgat 104  Q
    |||| |||||||| | |||||  ||||||||||| ||||| ||||||||  | |||||||||||||| |||||||||||||||||    
T  26751170 actcataaaccaacaatctatgctttccctcagcacaataaccccacataccaatcaaattcatgtggttaagccttccaatgat 26751254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 47212425 - 47212491
Alignment:
Q  36 tctatattttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaagccttccaatg 102  Q
    ||||| ||||||||| || ||||| ||||||||||| |||||||||||||| |||||| ||||||||    
T  47212425 tctatgttttccctctgcacaataaccccacatttcaatcaaattcatgtggttaagctttccaatg 47212491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 127
Target Start/End: Complemental strand, 26690425 - 26690340
Alignment:
Q  42 ttttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaagccttccaatgattcctacttcagctagaaattcac 127  Q
    ||||||||| || ||||| ||||||||  | |||||||||||||| ||||||||||||||||  |  |||||||| ||||||||||    
T  26690425 ttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaaattcac 26690340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 127
Target Start/End: Complemental strand, 26731736 - 26731651
Alignment:
Q  42 ttttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaagccttccaatgattcctacttcagctagaaattcac 127  Q
    ||||||||| || ||||| ||||||||  | |||||||||||||| ||||||||||||||||  |  |||||||| ||||||||||    
T  26731736 ttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaaattcac 26731651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 26694586 - 26694525
Alignment:
Q  42 ttttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaagccttccaatga 103  Q
    ||||||||| || ||||| ||||||||  | |||||||||||||| ||||||||||||||||    
T  26694586 ttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatga 26694525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 137
Target Start/End: Complemental strand, 39132098 - 39132016
Alignment:
Q  55 caatatccccacatttcgatcaaattcatgtgattaagccttccaatgattcctacttcagctagaaattcaccttcaccttg 137  Q
    ||||||||||||||||| || || ||||||||||| |||||||| ||||| | ||||||||| ||||| || ||||| |||||    
T  39132098 caatatccccacatttcaattaagttcatgtgattgagccttccgatgatgcttacttcagcaagaaactctccttccccttg 39132016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University