View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14961_high_4 (Length: 556)
Name: NF14961_high_4
Description: NF14961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14961_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 11743269 - 11743016
Alignment:
| Q |
1 |
agtgaatatgatagtgactgcattaatgagagtcaagaaaaatattggagcaatgaatcaacaacacatacagtgacgttctgagatatgtcaaagggaa |
100 |
Q |
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| T |
11743269 |
agtgaatatgatagtgactgcattaatgagagtcaagaaaaatattggagcaatgaatcaacaacacatacagtgacgttctgagatatgtcaaagggaa |
11743170 |
T |
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| Q |
101 |
agactgagatgaaaagaaagcattaatggaaatggaaggtgcatttattgacttgtgcagtgtacggactcattcagaaacttcatttttggccgcaaga |
200 |
Q |
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| T |
11743169 |
agactgagatgaaaagaaagcattaatggaaatggaaggtgcatttattgacttgtgcagtgtacggactcattcagaaacttcatttttggccgcaaga |
11743070 |
T |
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| Q |
201 |
agttaatatgatcaagaagggatggatacacacatcatgtaagatcaaggagaa |
254 |
Q |
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| T |
11743069 |
agttaatatgatcaaggagggatggatacacacatcatgcaagatgaaggagaa |
11743016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 319 - 535
Target Start/End: Complemental strand, 11743022 - 11742811
Alignment:
| Q |
319 |
aggagaaagtctaatcatttgtgtcaatctcaattggtaacttcaatcctttggtataaacctttactctatttcttttagctagaccgaatgacaa-ta |
417 |
Q |
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| T |
11743022 |
aggagaaagtcatatcatttgtggca-tctcaattggtaactttgatcgctcggtataaacctttactgt-----ttttagttagacgaaatgacaaata |
11742929 |
T |
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| Q |
418 |
caacataaaattctcacacaactacgggatcttagatttgaactcgagcaaagatgttcggcttaacaataatgatattgtcagttgagatattaaaaga |
517 |
Q |
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| T |
11742928 |
ttgcataaaattcatccataattacgagatcttagatttgaattcaagtgaagatgttcggtctaacaataatgatattgtcatttgagatattaaaaga |
11742829 |
T |
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| Q |
518 |
agtgacatgtaagcacaa |
535 |
Q |
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| T |
11742828 |
agtgacatgcaagcacaa |
11742811 |
T |
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