View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14961_high_8 (Length: 395)
Name: NF14961_high_8
Description: NF14961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14961_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 23 - 384
Target Start/End: Original strand, 48680804 - 48681162
Alignment:
| Q |
23 |
aatcctctttcacattcctcactcttattcttcgtgttcccttatttgtctctttgcttcctaatgtatcagaagctagatcattgctcaatcctttaca |
122 |
Q |
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| T |
48680804 |
aatcctctttcacattcctcactcttattcttcgtgttcccttatttgtctctttgcttcctaatgtatcagaagctagatcattgctcaatcctttaca |
48680903 |
T |
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| Q |
123 |
agggaaagaaggtgtaattggagaggtaaatggagtgttcaggacattgaaagaagactctggtccatcccctggagttgggcacaaacttaaaaaagct |
222 |
Q |
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| T |
48680904 |
agggaaagaaggtgtaattggagaggtaaatggagtgttcaggacattgaaagaagactctggtccatcccctggagttgggcacaaactt-aaaaagct |
48681002 |
T |
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| Q |
223 |
tcaaattattggtgggatgaaggactctggtcctagtccaggtgaagggcacaagtacataaccaacaacaatcactcataacataaattccttttcttt |
322 |
Q |
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| T |
48681003 |
tcaaattattggtgggatgaagga--ctggtcctagtccaggtgaagggcacaagtacataaccaacaacaatcactcataacataaattccaattcttt |
48681100 |
T |
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| Q |
323 |
ttgcttttatttgcaccgcactcatataaatactcaatacgaagtcttattgttgtttgtga |
384 |
Q |
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| T |
48681101 |
ttgcttttatttgcaccgctctcatataaatactcaatacgaagtctttttgttgtttgtga |
48681162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 87 - 262
Target Start/End: Original strand, 48697712 - 48697883
Alignment:
| Q |
87 |
tgtatcagaagctagatcattgctcaatcctttacaagggaaagaaggtgtaattggagaggtaaatggagtgttcaggacattgaaagaagactctggt |
186 |
Q |
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| T |
48697712 |
tgtatcagaagcaaggccattgcttagtcctttacaaggcaaagaagctgtaattggagaggtaaatggagtcttcaggacattgaaaggag---ctggt |
48697808 |
T |
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| Q |
187 |
ccatcccctggagttgggcacaaacttaaaaaagcttcaaattattggtgggatgaaggactctggtcctagtcca |
262 |
Q |
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| T |
48697809 |
ccatcccctggaattggacacaggctt-aaaaagcttcaaattattggagggatgaaggattctggtccaagtcca |
48697883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 32 - 218
Target Start/End: Original strand, 48687373 - 48687556
Alignment:
| Q |
32 |
tcacattcctcactcttattcttcgtgttcccttatttgtctctttgcttcctaatgtatcagaagctagatcattgctcaatcctttacaagggaaaga |
131 |
Q |
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|||||||||||||| ||||||||| |||| | || ||||||||||| ||||||||||||||||||||||| |||| || | ||| ||||||| | ||| |
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| T |
48687373 |
tcacattcctcacttttattcttcttgtttctttgtttgtctctttacttcctaatgtatcagaagctaggccatttcttagtccactacaaggcagaga |
48687472 |
T |
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| Q |
132 |
aggtgtaattggagaggtaaatggagtgttcaggacattgaaagaagactctggtccatcccctggagttgggcacaaacttaaaaa |
218 |
Q |
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| T |
48687473 |
aggtgtaattggagaggtaaatggagttttcaggacattaaaagatg---ctggtccatcccctggtgttggacacaagctcaaaaa |
48687556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 87 - 208
Target Start/End: Original strand, 48700997 - 48701115
Alignment:
| Q |
87 |
tgtatcagaagctagatcattgctcaatcctttacaagggaaagaaggtgtaattggagaggtaaatggagtgttcaggacattgaaagaagactctggt |
186 |
Q |
| |
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| T |
48700997 |
tgtatcagaagcaaggccattgcttagtccattacaaggcaaagaaggcgtaattggagaggtaaatggagtcttcaggacattgaaaggag---ctggt |
48701093 |
T |
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| Q |
187 |
ccatcccctggagttgggcaca |
208 |
Q |
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||||||||||||||||| |||| |
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| T |
48701094 |
ccatcccctggagttggacaca |
48701115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 222 - 304
Target Start/End: Original strand, 48693926 - 48694008
Alignment:
| Q |
222 |
ttcaaattattggtgggatgaaggactctggtcctagtccaggtgaagggcacaagtacataaccaacaacaatcactcataa |
304 |
Q |
| |
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| T |
48693926 |
ttcaagttattggagtgattaagcattctggacctagtccaggtgaagggcacaagtacataaccaacaataatcattcataa |
48694008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 231 - 304
Target Start/End: Original strand, 48687610 - 48687683
Alignment:
| Q |
231 |
ttggtgggatgaaggactctggtcctagtccaggtgaagggcacaagtacataaccaacaacaatcactcataa |
304 |
Q |
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| T |
48687610 |
ttggtgtgattaagcattctggtcctagtcctggtgaagggcacaagtatataaccaacaacaataactcataa |
48687683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 87 - 255
Target Start/End: Original strand, 48693696 - 48693863
Alignment:
| Q |
87 |
tgtatcagaagctagatcattgctcaatcctttacaagggaaagaaggtgtaattggagagg---taaatggagtgttcaggacattgaaagaagactct |
183 |
Q |
| |
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|||||||||||| || ||||||| | ||| |||||| | |||||||||| ||||||||||| | |||||||| |||||||||||||||| || || |
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| T |
48693696 |
tgtatcagaagcaaggccattgcttagtccattacaaagcaaagaaggtgaaattggagaggtgatgaatggagttttcaggacattgaaaggag---ct |
48693792 |
T |
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| Q |
184 |
ggtccatcccctggagttgggcacaaacttaaaaaagcttcaaattattggtgggatgaaggactctggtcc |
255 |
Q |
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| T |
48693793 |
ggtccatctcctgggattggacacaggctt-aaaaagcttcaaaatcttgaagggatgaaggattctggtcc |
48693863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 222 - 304
Target Start/End: Original strand, 48697945 - 48698027
Alignment:
| Q |
222 |
ttcaaattattggtgggatgaaggactctggtcctagtccaggtgaagggcacaagtacataaccaacaacaatcactcataa |
304 |
Q |
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| T |
48697945 |
ttcaagttattggagtgattaagcattctggacctagtccaggtgaagggcacaagtatataatcagcaacaaccactcataa |
48698027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 48700946 - 48700983
Alignment:
| Q |
18 |
actcaaatcctctttcacattcctcactcttattcttc |
55 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||| |
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| T |
48700946 |
actcaaatcctctatcacattcctcactcttattcttc |
48700983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 48693640 - 48693682
Alignment:
| Q |
13 |
ataatactcaaatcctctttcacattcctcactcttattcttc |
55 |
Q |
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| T |
48693640 |
ataagactcaaatcctctgtcacattcttcactcttattcttc |
48693682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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