View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14961_low_10 (Length: 351)
Name: NF14961_low_10
Description: NF14961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14961_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 21 - 335
Target Start/End: Complemental strand, 8449629 - 8449315
Alignment:
| Q |
21 |
atcatgtttgaattataaccaaacaggatgtgatgtatgtgagtgttaatatcaatacatatatactatatatgagagagaagataataactctagtgaa |
120 |
Q |
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| T |
8449629 |
atcatgtttgaattataaccaaacaggatgtgatgtatgtgagtgttaatatcaatacatatatactatatatgagagagaagataataactctagtgaa |
8449530 |
T |
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| Q |
121 |
aagagtgnnnnnnnntattaataaaaagtgttttagtaaaaaggtgacaagtgttatcagagataatcataaggtcatttggtggtgagcaacactcacc |
220 |
Q |
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| T |
8449529 |
aagagtgaaaagaaatattaataaaaagtgttttagtaaaaaggtgacaagtgttatcagagataatcataaggtcatttggtggtgagcaacactcacc |
8449430 |
T |
|
| Q |
221 |
atattaataaattggaaaaataaattaactataagcgcgtgttataaaacaaaactatataatttcagaaacaatgatattctttgttagagagagaaga |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8449429 |
atattaataaattggaaaaataaattaactataagcgcgtgttataaaacaaaactatataatttcagaaacaatgatattctttgttagagagagaaga |
8449330 |
T |
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| Q |
321 |
aaaacaaatgattat |
335 |
Q |
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||||||||||||||| |
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| T |
8449329 |
aaaacaaatgattat |
8449315 |
T |
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