View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14961_low_12 (Length: 350)
Name: NF14961_low_12
Description: NF14961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14961_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 5 - 334
Target Start/End: Complemental strand, 34549996 - 34549667
Alignment:
| Q |
5 |
ggaataattgtttacaacagaaagctaagattaaatttccaatattggaggaaatattactagagaagcttcctagcctcaaatgtttcagtgaaagcta |
104 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34549996 |
ggaataattgttcacaacagaaagctaagattaaatttccaatattggaggaaatattactagagaagcttcctagcctcaaatgtttcagtgaaagcta |
34549897 |
T |
|
| Q |
105 |
tttcccttgctatgttgagatgccaaaatgtgagttgatagtaattgatgactgcccagagatgaagaccttttgttacgaaggaatcttgtacactcca |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
34549896 |
tttcccttgctatgttgagatgccaaaatgtgagttgatagtaattaatgactgcccagagatgaagaccttttggtacgaaggaatcttatacactcca |
34549797 |
T |
|
| Q |
205 |
ggtatttataga-atttatttagaaaataccaaatttgacaaagatgaagatgttaatgaagtgatacaacgacagaataaatgattgtgtgtttggtgt |
303 |
Q |
| |
|
||| || | ||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34549796 |
ggtcttga-agagatttatgtagaaaatactaaatttgacaaagatgaagatgttaatgaagtgatacaacgacagaataaatgattgagtgtttggtgt |
34549698 |
T |
|
| Q |
304 |
gaggtatgaattattacaactatctcctttt |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
34549697 |
gaggtatgaattattacaactatctcctttt |
34549667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 34377380 - 34377711
Alignment:
| Q |
1 |
attgggaataattgtttacaacagaaagctaagattaaatttccaatattggaggaaatattactagagaagcttcctagcctcaaatgtttcagtgaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| || | |||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
34377380 |
attgggaataattgtttacaacagaaagctaagattaaattcccaaagctgatgaaaattaaactaaagaagcttcctagcctcaaatgtttcagtgaaa |
34377479 |
T |
|
| Q |
101 |
gctatttcccttgctatgttgagatgccaaaatgtgagttgatagtaattgatgactgcccagagatgaagaccttttgttacgaaggaatcttgtacac |
200 |
Q |
| |
|
||| ||||| |||||| |||||||||||| |||||||| |||| ||||| ||||||| |||||||||||||||||||| ||| | |||||||||||||| |
|
|
| T |
34377480 |
gctctttccattgctacgttgagatgccagcatgtgagtggatactaattaatgactgtccagagatgaagaccttttggtacaatggaatcttgtacac |
34377579 |
T |
|
| Q |
201 |
tccaggtatttatagaatttatttagaaaataccaaatttgacaaagatgaagatgttaatgaagtgatacaacgacagaataaatgattgtgtgtttgg |
300 |
Q |
| |
|
|||||||||||||||||||| | ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34377580 |
tccaggtatttatagaatttgtgtagaagataccaaatttgacatagatgaagatgttaatgaagtgatacaacgacagaataaatgattgtgtgtttgg |
34377679 |
T |
|
| Q |
301 |
tgtgaggtatgaattattacaactatctcctt |
332 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
|
|
| T |
34377680 |
tgtgaggtatgaattattacaactttctcctt |
34377711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 68 - 310
Target Start/End: Original strand, 134952 - 135193
Alignment:
| Q |
68 |
agaagcttcctagcctcaaatgtttcagtgaaagctatttcccttgctatgttgagatgccaaaatgtgagttgatagtaattgatgactgcccagagat |
167 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||| ||||||||||||| ||||||||||| ||||| | ||| |||||| |||||||||||||| |
|
|
| T |
134952 |
agaagcttcctagcctcaaatgtttcggtcaaagctctttcccttgctatattgagatgccacaatgtcggcgaataaaaattgaagactgcccagagat |
135051 |
T |
|
| Q |
168 |
gaagaccttttgttacgaaggaatcttgtacactccaggtatttatagaatttatttagaaaataccaaatttgacaaagatgaagatgttaatgaagtg |
267 |
Q |
| |
|
|||||||||||| | |||||||||||| ||||| ||| || ||||| ||||| |||| ||||||||||||||||| || | |||||||||||||| ||| |
|
|
| T |
135052 |
gaagaccttttggttcgaaggaatcttatacaccccacgtctttatgaaatttctttaaaaaataccaaatttgacgaatacgaagatgttaatgacgtg |
135151 |
T |
|
| Q |
268 |
atacaacgacagaataaatgattgtgtgtttggtgtgaggtat |
310 |
Q |
| |
|
||||||||||| |||||||||| | ||| ||||| |||||||| |
|
|
| T |
135152 |
atacaacgacacaataaatgatcgagtg-ttggtatgaggtat |
135193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University