View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14961_low_13 (Length: 319)
Name: NF14961_low_13
Description: NF14961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14961_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 69 - 305
Target Start/End: Complemental strand, 9645547 - 9645311
Alignment:
| Q |
69 |
ccatcaattgacaaattgtatacaaatgtgttatatgaaaatttctctgagtggtattcaatttatctacttggtgttctgaacgaattaagagtttata |
168 |
Q |
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| T |
9645547 |
ccatcaattgacaaattgtatacaaatgtgttatatgaaaatttctttgagtggtattcaatttatctacttggtgttctgaacgaattaagagtttata |
9645448 |
T |
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| Q |
169 |
aagtgaagctatatatatggaggtaacactacatggcaacaaaaattgtccaacagaaagtagtaacttatgaaattgaaattacaatgaaacgaaaatg |
268 |
Q |
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| T |
9645447 |
gagtgaagctatatatatgaaggtaacactacatgacaacaaaaattgtccaacagaaagtagtaacttatgaaattgaaattacaatgaaacgaaaatg |
9645348 |
T |
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| Q |
269 |
aaatgccaactatcgaaatgagtgcatatgactatcc |
305 |
Q |
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| T |
9645347 |
aaatgctaactatctaaatgagtgcatatgactatcc |
9645311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 30364302 - 30364256
Alignment:
| Q |
29 |
aatatggatgattttggttgatcatggttctgttattgttccatcaa |
75 |
Q |
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| T |
30364302 |
aatatggatgattttggttgaccattgttatgttattgctccatcaa |
30364256 |
T |
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