View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14961_low_14 (Length: 318)

Name: NF14961_low_14
Description: NF14961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14961_low_14
NF14961_low_14
[»] chr2 (1 HSPs)
chr2 (12-308)||(34849380-34849673)


Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 12 - 308
Target Start/End: Original strand, 34849380 - 34849673
Alignment:
Q  12 tgtttttcttctggcataataaatttttaattaagatttaattaaatatgagggtcagcaactaattaaattattatttttgagannnnnnnnatcaaga 111  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        || ||||    
T  34849380 tgtttttcatttggcataataaatttttaattaagatttaattaaatatgagggtcagcaactaattaaattattatttttgagattttttttataaaga 34849479  T
Q  112 aaattgaagaggaaattatattagtgatggtggcactaaaaccatttgacaattgttattggaactcagtctcttcagtgtcaaagtcatagcactaaac 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  34849480 aaattgaagaggaaattatattagtgatggtggcactaaaaccatttgacaattgttattggaactcagtctcttcagtgtcaaagtc--agcactaaac 34849577  T
Q  212 taacccataataaacaaataataatcaatattttattagtatagataaacatgttgcatttatatatacacacactagtgctacgtagaataatcta 308  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||| || || ||||||||||||||||||||| ||||| ||||||||||    
T  34849578 taacccataataaacaattaataatcaatattttactagtatagataaacatcttaca-ttatatatacacacactagtgttacgtggaataatcta 34849673  T

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