View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14961_low_15 (Length: 316)
Name: NF14961_low_15
Description: NF14961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14961_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 15 - 308
Target Start/End: Original strand, 13079622 - 13079915
Alignment:
| Q |
15 |
tcagtttcctccatctcttgaaacttatttggttttcttccatcagatattccaatatcaacattctcttgaaacttttgatttataatttccttctcaa |
114 |
Q |
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| T |
13079622 |
tcagtttcctccatctcttgaaacttatttggttttcttccatcaaatattccaatatcaacattctcttgaaacttttgatttataatttccttctcaa |
13079721 |
T |
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| Q |
115 |
ttctatctctagttgtgtctccctcaaaaggctcatttggttcaacatttagctttgtaaatccctctcctttcaacttcactatagcatattcaatttt |
214 |
Q |
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| T |
13079722 |
ttctatctctagtagtgtctccctcaaaaggctcatttggttcaacatttagctttgtaaatccctctcctttcaacttcactatagcatattcaatttt |
13079821 |
T |
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| Q |
215 |
attttcctcatcctcgactcttttggccacaattctctccttgaattcttcttcttgtgtcttttccatcgaactttcactttcaacctatgct |
308 |
Q |
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| T |
13079822 |
attttcctcatcctcgactcttttggccacaattctctccttgaattcttcttcttgtgtcttttccatcgaactttcactttcaaccaatgct |
13079915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 13075415 - 13075639
Alignment:
| Q |
15 |
tcagtttcctccatctcttgaaacttatttggttttcttccatcagatattccaatatcaacattctcttgaaacttttgatttataatttccttctcaa |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13075415 |
tcagtttcctccatctcttgaaacttatttggttttcttccatcaaatattccaatatcaacattctcttgaaacttttgatttataatttccttctcaa |
13075514 |
T |
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| Q |
115 |
ttctatctctagttgtgtctccctcaaaaggctcatttggttcaacatttagctttgtaaatccctctcctttcaacttcactatagcatattcaatttt |
214 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13075515 |
ttctgtctctagttgtgtctccctcaaaaggctcatttggttcaacatttagctttgtaaatccctctcctttcaacttcactatagcatattcaatttt |
13075614 |
T |
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| Q |
215 |
attttcctcatcctcgactcttttg |
239 |
Q |
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| T |
13075615 |
attttcctcatcctcgactcttttg |
13075639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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