View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14961_low_18 (Length: 258)
Name: NF14961_low_18
Description: NF14961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14961_low_18 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 28850102 - 28849878
Alignment:
| Q |
16 |
aatatcaaaactcatctttaagcaaagcatgcaaattagagactagaatcaaaacaattcggcattgttaagcaaataaattacatatacaattttcact |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28850102 |
aatatcaaaactcatctttaagcaaagcatgcaaattagagactagaatcaaaacaattcggcattgttaagcaaataaattacatatacaattttcact |
28850003 |
T |
|
| Q |
116 |
agcttgtaagctaataataaattaattcataaatgcatactgattatgtcatgaatgtttaggccattagagaaacgttcggtgggtttgtttgtaggaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| | |
|
|
| T |
28850002 |
agcttgtaagctaataataaattaattcataaacacatactgattatgtcatgaatgtttaggccattagagaaacgttcggtgagtttgtgtgtaggga |
28849903 |
T |
|
| Q |
216 |
aattaatgtcatataggggagtgtg |
240 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
28849902 |
aattaatgtcatataggggagtgtg |
28849878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 213
Target Start/End: Original strand, 35372390 - 35372579
Alignment:
| Q |
21 |
caaaactcatctttaagcaaagcatgcaaattagagactagaatcaaaacaattcggcattgttaagcaaataaattacatatacaattttcactagctt |
120 |
Q |
| |
|
|||| ||||||||||||||| ||||||| ||||||||||| || |||||||||| | ||||||||||||| |||||||||| || |||||||||||||| |
|
|
| T |
35372390 |
caaatctcatctttaagcaatgcatgcacattagagactataaccaaaacaatttgtcattgttaagcaagtaaattacatgcactattttcactagctt |
35372489 |
T |
|
| Q |
121 |
g----taagctaataataaattaattcataaatgcatactgattatgtcatgaatgtttaggccattagagaaacgttcggtgggtttgtttgtagg |
213 |
Q |
| |
|
| |||| ||| || || | |||| |||||||||||||||| |||| ||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
35372490 |
gtatttaagttaagaacaagt-------taaacacatactgattatgtcaggaatatttaggccattagagaaacgtccggtgggtttgtgtgtagg |
35372579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 35378034 - 35378250
Alignment:
| Q |
16 |
aatatcaaaactcatctttaagcaaagcatgcaaattagagactagaatcaaaacaattcggcattgttaagcaaataaattacatatacaattttcact |
115 |
Q |
| |
|
||||||||||| | ||||| |||| |||||||||| ||| ||||||| |||| | |||| ||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
35378034 |
aatatcaaaaccctactttatgcaatgcatgcaaatgaga-actagaaccaaa-cgattcaacattgttaagcaagtaaattacatatactattttcact |
35378131 |
T |
|
| Q |
116 |
agcttgtaa----gctaataataaattaattcataaatgcatactgattatgtcatgaatgtttaggccattagagaaacgttcggtgggtttgtttgta |
211 |
Q |
| |
|
|||| |||| |||||||| ||||||| | |||||||||||| ||| |||||||||||||||||||||||||| | || ||||||| ||| |
|
|
| T |
35378132 |
agctagtaattaagctaataacaaattaa-------actcatactgattatatcaggaatgtttaggccattagagaaacgtccagtaggtttgtgcgta |
35378224 |
T |
|
| Q |
212 |
ggaaaattaatgtcatataggggagt |
237 |
Q |
| |
|
|| |||| |||| ||||| ||||||| |
|
|
| T |
35378225 |
gggaaatcaatgccatatgggggagt |
35378250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University