View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14961_low_2 (Length: 573)
Name: NF14961_low_2
Description: NF14961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14961_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 372 - 563
Target Start/End: Complemental strand, 19805176 - 19804985
Alignment:
| Q |
372 |
agttgtgatttctgactgtaattcaattccgattcaaacaataatcgttcctgcaaaattgtatgagattttcgaaccactttgtgaagaaataaatttc |
471 |
Q |
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| T |
19805176 |
agttgtgatttctcactgtaattcaattccgattcaaacaaaaatcgttcctgcagaattgtatgagattttcgaaccactttgtgaagaaataaatttc |
19805077 |
T |
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| Q |
472 |
agattcatctttacattttcgtgcaatttggtccctgaaagtttctgtttgcaatttctgcatccctgttcttatttatttatttgcctttg |
563 |
Q |
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| T |
19805076 |
agattcatctttacattttcgtgcaattcggtccctgaaagtttctgtttgcaatttctgcatccctgttcttatttatttatttgcctttg |
19804985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 176; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 372 - 563
Target Start/End: Complemental strand, 27775650 - 27775459
Alignment:
| Q |
372 |
agttgtgatttctgactgtaattcaattccgattcaaacaataatcgttcctgcaaaattgtatgagattttcgaaccactttgtgaagaaataaatttc |
471 |
Q |
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| T |
27775650 |
agttgtgatttctcactgtaattcaattccgattcaaacaaaaatcgttcctgcagaattgtatgagattttcgaaccactttgtgaagaaataaatttc |
27775551 |
T |
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| Q |
472 |
agattcatctttacattttcgtgcaatttggtccctgaaagtttctgtttgcaatttctgcatccctgttcttatttatttatttgcctttg |
563 |
Q |
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| T |
27775550 |
agattcatctttacattttcgtgcaattcggtccctgaaagtttctgtttgcaatttctgcatccctgttcttatttatttatttgcctttg |
27775459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 165; Significance: 6e-88; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 372 - 563
Target Start/End: Original strand, 40577886 - 40578075
Alignment:
| Q |
372 |
agttgtgatttctgactgtaattcaattccgattcaaacaataatcgttcctgcaaaattgtatgagattttcgaaccactttgtgaagaaataaatttc |
471 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40577886 |
agttgtgatttctta--gtaattcaattccgattcaaacaataatcgttcctgcagaattgtatgagattttcgaaccactttgtgaagaaataaatttc |
40577983 |
T |
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| Q |
472 |
agattcatctttacattttcgtgcaatttggtccctgaaagtttctgtttgcaatttctgcatccctgttcttatttatttatttgcctttg |
563 |
Q |
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| T |
40577984 |
agattcatctttacattttcgtgcaatttggtccctgaaagtttctgtttgcaatttctgcatctctgttcttatttatttatttgcttttg |
40578075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 94 - 248
Target Start/End: Original strand, 40577585 - 40577738
Alignment:
| Q |
94 |
tagcagaaagtattcctacatatgactatgacttatcaagtttgggtaaataccatacatatagcatttaaaagtagcgagaacagtttacttttggggt |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40577585 |
tagcagaaagtattcctacatatgactatgacttatcaagtttgggaaaataccatacatatagcatttaaaagtagggagaacagtttacttttgggg- |
40577683 |
T |
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| Q |
194 |
ttccgggagatatttcccctggcaaatacacgtgtttcttatagtgtgtgtgaag |
248 |
Q |
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| T |
40577684 |
ttccgggagatatttcccctggcaaatacacgtgtttcttgtagtgtgtgtgaag |
40577738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 40577431 - 40577490
Alignment:
| Q |
1 |
tcatggaatatgagagttaatgaagctacttattttgttatgtttatcacttttatctgt |
60 |
Q |
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| T |
40577431 |
tcatggaatatgagagttaatgaagctacttattttgttatgtttatcacttttatctgt |
40577490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 40577758 - 40577820
Alignment:
| Q |
244 |
tgaagaaattcctgaagcaggtcattggaaaaatcgtgccaccatgaaatcgtaacagaaacg |
306 |
Q |
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| T |
40577758 |
tgaagaaattcctgaagcaagtcattggaaaaatcgtgccacaatggaatcgtaacagaaacg |
40577820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 19850701 - 19850753
Alignment:
| Q |
1 |
tcatggaatatgagagttaatgaagctacttattttgttatgtttatcacttt |
53 |
Q |
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| T |
19850701 |
tcatggaatatcagaatgaatgaagctacttattttgttatgtttatcacttt |
19850753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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