View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14961_low_20 (Length: 251)
Name: NF14961_low_20
Description: NF14961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14961_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 28850240 - 28850477
Alignment:
| Q |
1 |
ctgtaagtttagttagtttttaatgttataaatatgactagttagttttgttataggaggataaaactgttagtgacatgaatcaaacattgatcatcct |
100 |
Q |
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| T |
28850240 |
ctgtaagtttagttagttgttaatgttataaatatgactggttacttttgttataggaggataaaactgttagtgacatgaatcaaacattgatcatcct |
28850339 |
T |
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| Q |
101 |
tttttaactccctcactgttctagaggcgaatccatgaa-nnnnnnnnnngtggttaaaatgataatgtcaaaaaatttgtccaattaaatattctctcc |
199 |
Q |
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| T |
28850340 |
tttttaactccctcactgttctaaatgcggatccatgaatatttttttttgtggttcaaatgataatgtcaaaaaaaat-tccaattaaatattctctcc |
28850438 |
T |
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| Q |
200 |
ttctatgctatgtccaaatcattttgtcttctatatatt |
238 |
Q |
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||||||||||||| ||||||||||||||||||||||||| |
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| T |
28850439 |
ttctatgctatgtgcaaatcattttgtcttctatatatt |
28850477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 2 - 103
Target Start/End: Complemental strand, 35372237 - 35372136
Alignment:
| Q |
2 |
tgtaagtttagttagtttttaatgttataaatatgactagttagttttgttataggaggataaaactgttagtgacatgaatcaaacattgatcatcctt |
101 |
Q |
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||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||| || ||| || ||||||| |||||||||| |||||||||||| |
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| T |
35372237 |
tgtaagtttagttagttgttattgttataaatatgactggttagttttgttataggatgacgaaattgctagtgacgtgaatcaaactttgatcatcctt |
35372138 |
T |
|
| Q |
102 |
tt |
103 |
Q |
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|| |
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|
| T |
35372137 |
tt |
35372136 |
T |
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