View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14961_low_24 (Length: 231)
Name: NF14961_low_24
Description: NF14961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14961_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 48385815 - 48385619
Alignment:
| Q |
13 |
atcatcatttgagataacttgcatcaggttccatgtgtctgagatgaacaccttgtggaagaaggttgtatcttatattgagatcttcaaatattttctt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48385815 |
atcatcatttgagataacttgcatcaggttccatgtgtctgagatgaacaccttgtggaagaaggttgtatcttatattgagatcttcaaatattttctt |
48385716 |
T |
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| Q |
113 |
tacttccattactagttcacttctccgcttggtcttctctccaaactcttgaaaattcattgtgtgagtaacaaaaagacccatcttaatattattt |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48385715 |
tacttccattactagttcacttctccgcttggtcttctctccaaactcttgaaaattcattgtgtgagtaacaaaaagacccatcttaatattattt |
48385619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 48396266 - 48396462
Alignment:
| Q |
13 |
atcatcatttgagataacttgcatcaggttccatgtgtctgagatgaacaccttgtggaagaaggttgtatcttatattgagatcttcaaatattttctt |
112 |
Q |
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||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| |||||| |||||||| ||||||||||||||||| |
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| T |
48396266 |
atcatcacttgagataacttgaatcaggttccatgtgtctgagatgaacaccttgcggaataaggtagtatctgatattgagctcttcaaatattttctt |
48396365 |
T |
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| Q |
113 |
tacttccattactagttcacttctccgcttggtcttctctccaaactcttgaaaattcattgtgtgagtaacaaaaagacccatcttaatattattt |
209 |
Q |
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||||||||| |||| ||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||| |||||||||||||||| |||||| |
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| T |
48396366 |
tacttccatcactaattcacttctccgcttagtcttctccccaaattcttgaaagttcattgtgtgagtaacataaagacccatcttaatcttattt |
48396462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 48366284 - 48366089
Alignment:
| Q |
14 |
tcatcatttgagataacttgcatcaggttccatgtgtctgagatgaacaccttgtggaagaaggttgtatcttatattgagatcttcaaatattttcttt |
113 |
Q |
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||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||| | || |
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| T |
48366284 |
tcatcatttgagagaacttgtgtcaggttctatgtgtctgagatgaacaccttgtggaagaaggctgtatctgatattgagctcttcaaatattctttta |
48366185 |
T |
|
| Q |
114 |
acttccattactagttcacttctccgcttggtcttctctccaaactcttgaaaattcattgtgtgagtaacaaaaagacccatcttaatattattt |
209 |
Q |
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|||||||| |||||||||||| ||| || ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||| |
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| T |
48366184 |
acttccatcactagttcacttttcctattcaccttctctccaaactcttgaaagttcattgtgtgagtaacataaagacccatcttaatcttattt |
48366089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 33618671 - 33618735
Alignment:
| Q |
13 |
atcatcatttgagataacttgcatcaggttccatgtgtctgagatgaacaccttgtggaagaagg |
77 |
Q |
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||||||||||||| |||||| || ||||||||||||||| ||||||||||||||||||| |||| |
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| T |
33618671 |
atcatcatttgagtaaacttgtattaggttccatgtgtctaagatgaacaccttgtggaataagg |
33618735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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