View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14961_low_26 (Length: 222)
Name: NF14961_low_26
Description: NF14961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14961_low_26 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 46177872 - 46178087
Alignment:
| Q |
7 |
tttgttccacattttgtaaaagctaatatagaaaccattaagttagttaacttgcactgcaagttaactaggaccttaaccacttgtaactgttgcctaa |
106 |
Q |
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| T |
46177872 |
tttgttccacattttgtaaaagctaatatagaaaccattaagttagttaacttgcactacaagttaactaggaccttaaccacttgtaactgttgcctaa |
46177971 |
T |
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| Q |
107 |
ccatgattagttgatagaagtaaccaaagctagctgttagttaggaggggatataggtgctatatatactctttctacactacttgtaatttcaattttg |
206 |
Q |
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| T |
46177972 |
ccatgattagttgatagaagtaaccacagctagttgttagttaggaggggatgtaggtgctatatatactctttctacactacttgtaatttcaattttg |
46178071 |
T |
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| Q |
207 |
tttgaaataacataat |
222 |
Q |
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| T |
46178072 |
tttgaaataacataat |
46178087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 54722152 - 54722236
Alignment:
| Q |
47 |
agttagttaacttgcactgcaagttaactaggaccttaaccacttgtaactgttgcctaaccatgattagttgatagaagtaacca |
132 |
Q |
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| T |
54722152 |
agttagttaacttgcactacaagttaactgggatcttaactccttgtaaccgttttctaaccatgattacct-atagaagtaacca |
54722236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 21212676 - 21212644
Alignment:
| Q |
163 |
gtgctatatatactctttctacactacttgtaa |
195 |
Q |
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| T |
21212676 |
gtgctatatatactcttcctacactacttgtaa |
21212644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 2673846 - 2673762
Alignment:
| Q |
47 |
agttagttaacttgcactgcaagttaactaggaccttaaccacttgtaactgttgcctaaccatgattagttgatagaagtaacca |
132 |
Q |
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| T |
2673846 |
agttagttaacttgcactgcaagttaactaggtcgttaactacttgtaactgttttctaactatgattagat-atagaagtaacca |
2673762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 5293748 - 5293832
Alignment:
| Q |
47 |
agttagttaacttgcactgcaagttaactaggaccttaaccacttgtaactgttgcctaaccatgattagttgatagaagtaacca |
132 |
Q |
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| T |
5293748 |
agttagttaacttgcactacaagttaactaggatcttaactccttgtaaccgttttctaaccatgattacct-atagaagtaacca |
5293832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 5298300 - 5298384
Alignment:
| Q |
47 |
agttagttaacttgcactgcaagttaactaggaccttaaccacttgtaactgttgcctaaccatgattagttgatagaagtaacca |
132 |
Q |
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| T |
5298300 |
agttagttaacttgcactacaagttaactaggatcttaactccttgtaaccgttttctaaccatgattacct-atagaagtaacca |
5298384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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