View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14961_low_3 (Length: 572)

Name: NF14961_low_3
Description: NF14961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14961_low_3
NF14961_low_3
[»] chr6 (45 HSPs)
chr6 (41-440)||(26650847-26651240)
chr6 (41-440)||(26756815-26757208)
chr6 (37-368)||(27422504-27422831)
chr6 (113-440)||(26964088-26964411)
chr6 (37-178)||(26966097-26966238)
chr6 (37-171)||(27714117-27714251)
chr6 (170-375)||(26629415-26629622)
chr6 (170-375)||(26735391-26735598)
chr6 (37-171)||(27702350-27702484)
chr6 (38-170)||(26890066-26890198)
chr6 (37-171)||(26628012-26628146)
chr6 (73-167)||(26640678-26640772)
chr6 (37-171)||(26733989-26734123)
chr6 (73-167)||(26746644-26746738)
chr6 (36-173)||(26631458-26631594)
chr6 (36-173)||(26737433-26737569)
chr6 (36-169)||(26828368-26828501)
chr6 (461-557)||(31290869-31290965)
chr6 (218-369)||(26965931-26966082)
chr6 (40-123)||(27652256-27652339)
chr6 (180-279)||(31291166-31291264)
chr6 (109-171)||(27652343-27652405)
chr6 (193-257)||(27652530-27652594)
chr6 (88-171)||(31291376-31291459)
chr6 (76-169)||(26853623-26853714)
chr6 (460-529)||(27652757-27652826)
chr6 (426-482)||(27422832-27422888)
chr6 (328-375)||(27652664-27652711)
chr6 (322-375)||(26640358-26640411)
chr6 (322-375)||(26746324-26746377)
chr6 (460-519)||(26640274-26640331)
chr6 (460-519)||(26746240-26746297)
chr6 (409-448)||(26629362-26629401)
chr6 (409-448)||(26735338-26735377)
chr6 (460-502)||(27506761-27506803)
chr6 (41-135)||(27588393-27588487)
chr6 (483-548)||(26964021-26964086)
chr6 (335-418)||(28783611-28783694)
chr6 (77-124)||(28790203-28790250)
chr6 (483-553)||(26650775-26650845)
chr6 (483-553)||(26756743-26756813)
chr6 (358-455)||(27606872-27606969)
chr6 (38-171)||(27712683-27712817)
chr6 (37-82)||(31289405-31289450)
chr6 (91-127)||(26807297-26807333)
[»] scaffold0003 (2 HSPs)
scaffold0003 (37-368)||(64532-64859)
scaffold0003 (426-482)||(64475-64531)
[»] scaffold0349 (1 HSPs)
scaffold0349 (37-171)||(17693-17827)
[»] chr8 (1 HSPs)
chr8 (36-171)||(29270009-29270144)
[»] chr4 (6 HSPs)
chr4 (180-262)||(18692628-18692710)
chr4 (61-171)||(5083085-5083197)
chr4 (459-510)||(18719305-18719354)
chr4 (180-220)||(18674557-18674597)
chr4 (460-510)||(18674703-18674751)
chr4 (463-510)||(18692787-18692832)
[»] chr1 (1 HSPs)
chr1 (61-138)||(26141211-26141288)
[»] scaffold0277 (2 HSPs)
scaffold0277 (77-135)||(816-874)
scaffold0277 (77-124)||(9949-9996)
[»] scaffold0419 (1 HSPs)
scaffold0419 (77-124)||(11349-11396)


Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 45)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 41 - 440
Target Start/End: Complemental strand, 26651240 - 26650847
Alignment:
Q  41 gattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaacaagt 140  Q
    ||||||| |||||||| ||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26651240 gattctgtggtgcgagaaatctctagacatatcgcatgacaatgcacatagacaggtgactacagatggtttcctgacaatgtacagacaaagaacaagt 26651141  T
Q  141 aaatgcttagttttagttagagaaaagttgcctgaatttgaaacataacatcctcatgtttatttcaacaagagaggatccactcttgaaatagtcatac 240  Q
     ||| | ||||||| |||| |||||| ||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||| ||||||| |||| ||    
T  26651140 taattcgtagttttggttaaagaaaacttgcctgaatttgaaacataactaccttatgtttatttcaacaagagaggatccacttttgaaattgtcaaac 26651041  T
Q  241 aaaccattatgcagaaaccaaaaaattctaatatgttacggttaaaacgagaaagttaaattaaattcatcttaagagatttataagtcatatgaataaa 340  Q
    |||||| |||||| |||||||||| |||| | | |||  ||| |||| |||      |||| |||||||| |||| | |||| |||||||||||||||||    
T  26651040 aaaccactatgcaaaaaccaaaaatttctcacacgttttggtcaaaatgag------aaatgaaattcattttaaaatatttttaagtcatatgaataaa 26650947  T
Q  341 ggaaatgttaattcatgagatacattaaagagaaacaaagtaccaatttgtaagacttcaaaatgaaatggaagaaaaaatatatggagtagcagataaa 440  Q
    ||||||||||||||| ||||||||||||||||||||  ||||||| |||||||||||||| || || | ||||||||||||||| ||||||| |||||||    
T  26650946 ggaaatgttaattcacgagatacattaaagagaaacggagtaccagtttgtaagacttcacaaagataaggaagaaaaaatataaggagtagaagataaa 26650847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 41 - 440
Target Start/End: Complemental strand, 26757208 - 26756815
Alignment:
Q  41 gattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaacaagt 140  Q
    ||||||| |||||||| ||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26757208 gattctgtggtgcgagaaatctctagacatatcgcatgacaatgcacatagacaggtgactacagatggtttcctgacaatgtacagacaaagaacaagt 26757109  T
Q  141 aaatgcttagttttagttagagaaaagttgcctgaatttgaaacataacatcctcatgtttatttcaacaagagaggatccactcttgaaatagtcatac 240  Q
     ||| | ||||||| |||| |||||| ||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||| ||||||| |||| ||    
T  26757108 taattcgtagttttggttaaagaaaacttgcctgaatttgaaacataactaccttatgtttatttcaacaagagaggatccacttttgaaattgtcaaac 26757009  T
Q  241 aaaccattatgcagaaaccaaaaaattctaatatgttacggttaaaacgagaaagttaaattaaattcatcttaagagatttataagtcatatgaataaa 340  Q
    |||||| |||||| |||||||||| |||| | | |||  ||| |||| |||      |||| |||||||| |||| | |||| |||||||||||||||||    
T  26757008 aaaccactatgcaaaaaccaaaaatttctcacacgttttggtcaaaatgag------aaatgaaattcattttaaaatatttttaagtcatatgaataaa 26756915  T
Q  341 ggaaatgttaattcatgagatacattaaagagaaacaaagtaccaatttgtaagacttcaaaatgaaatggaagaaaaaatatatggagtagcagataaa 440  Q
    ||||||||||||||| ||||||||||||||||||||  ||||||| |||||||||||||| || || | ||||||||||||||| ||||||| |||||||    
T  26756914 ggaaatgttaattcacgagatacattaaagagaaacggagtaccagtttgtaagacttcacaaagataaggaagaaaaaatataaggagtagaagataaa 26756815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 37 - 368
Target Start/End: Original strand, 27422504 - 27422831
Alignment:
Q  37 aacggattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaac 136  Q
    ||||||||||  | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27422504 aacggattctatgctgcgagcaatctctagacatgtcgcatgacaatgcaaatagccagatgactacagatggtttcctgacaatgtacagacaaagaac 27422603  T
Q  137 aagtaaatgcttagttttagttagagaaaagttgcctgaatttgaaacataacatcctcatgtttatttcaacaagagaggatccactcttgaaatagtc 236  Q
    |||||||||||||||||| |||||||||||||||||||| ||| ||||||||  || | ||||||||||||||||||||| ||||||||||||||| |||    
T  27422604 aagtaaatgcttagttttcgttagagaaaagttgcctgagtttcaaacataatttctttatgtttatttcaacaagagagaatccactcttgaaattgtc 27422703  T
Q  237 atacaaaccattatgcagaaaccaaaaaattctaatatgttacggttaaaacgagaaagttaaattaaattcatcttaagagatttataagtcatatgaa 336  Q
    ||||||||||||||||||||| ||||||||||| | |||||||||| |||| |||||| | |||| |||||||  |||| | ||| |||| |||||||      
T  27422704 atacaaaccattatgcagaaaacaaaaaattctgacatgttacggtcaaaatgagaaaataaaatgaaattcagtttaaaatattaataaatcatatg-- 27422801  T
Q  337 taaaggaaatgttaattcatgagatacattaa 368  Q
      |||||||| | ||||| |||||||||||||    
T  27422802 --aaggaaatatgaattcttgagatacattaa 27422831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 113 - 440
Target Start/End: Complemental strand, 26964411 - 26964088
Alignment:
Q  113 cctgacaatgtacagacaaagaacaagtaaatgcttagttttagttagagaaaagttgcctgaatttgaaacataacatcctcatgtttatttcaacaag 212  Q
    ||||||||||||||||||||||| ||||||||   ||||||| |||||||| || ||||||||||||||||||||||  ||| ||||||||||||||  |    
T  26964411 cctgacaatgtacagacaaagaaaaagtaaatttgtagttttggttagagataacttgcctgaatttgaaacataactaccttatgtttatttcaac--g 26964314  T
Q  213 agaggatccactcttgaaatagtcatacaaaccattatgcagaaaccaaaaaattctaatatgttacggttaaaac-gagaaagttaaattaaattcatc 311  Q
    |||||||||||| ||||||| ||| ||||||||| |||||| |||| |||||||||||| ||||| |||| ||||  |||||  | |||| ||||||||     
T  26964313 agaggatccacttttgaaattgtcgtacaaaccactatgcaaaaac-aaaaaattctaacatgtttcggtcaaaaatgagaa--taaaatgaaattcatt 26964217  T
Q  312 ttaagagatttataagtcatatgaataaaggaaatgttaattcatgagatacattaaagagaaacaaagtaccaatttgtaagacttcaaaatgaaatgg 411  Q
    |||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||  | |||||  ||||||||||||| || |||||||    
T  26964216 ttaaaagatttataagtcatatgaataaaggaagtgttaattcacgagatacattaaagagaaacggattaccagattgtaagacttcacaaagaaatgg 26964117  T
Q  412 aagaaaaaatatatggagtagcagataaa 440  Q
    ||||||||||||| |||||||||||||||    
T  26964116 aagaaaaaatataaggagtagcagataaa 26964088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 37 - 178
Target Start/End: Complemental strand, 26966238 - 26966097
Alignment:
Q  37 aacggattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaac 136  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  26966238 aacggattctgtggtgcaagcaatctctagacatgtcgcatgacagtgcaaatagccagatgactacagatggtgtcctgacaatgtacagtcaaagaac 26966139  T
Q  137 aagtaaatgcttagttttagttagagaaaagttgcctgaatt 178  Q
    ||||||| |||||||||| ||| |||||||||||||||||||    
T  26966138 aagtaaaagcttagttttggtttgagaaaagttgcctgaatt 26966097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 37 - 171
Target Start/End: Original strand, 27714117 - 27714251
Alignment:
Q  37 aacggattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaac 136  Q
    ||||||||||||| ||  ||||| |||||||| ||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||| ||||||||    
T  27714117 aacggattctgcgctgtaagcaacctctagacttgtcgcatgacaatgcaaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaac 27714216  T
Q  137 aagtaaatgcttagttttagttagagaaaagttgc 171  Q
    ||| |||| ||||||||| ||||||||||||||||    
T  27714217 aagaaaatacttagttttggttagagaaaagttgc 27714251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 170 - 375
Target Start/End: Complemental strand, 26629622 - 26629415
Alignment:
Q  170 gcctgaatttgaaacataacatcctcatgtttatttcaacaagagaggatccactcttgaaatagtcatacaaaccattatgcagaaaccaaaaaattct 269  Q
    |||| ||||||||||||||| |||| ||||||||| ||||| ||||||||||||||||||||| |||||| ||||||||||| ||||| |||||||||||    
T  26629622 gcctaaatttgaaacataacttccttatgtttattccaacatgagaggatccactcttgaaattgtcatataaaccattatgtagaaaacaaaaaattct 26629523  T
Q  270 aatatgttacggttaaaacgagaaagttaaa--ttaaattcatcttaagagatttataagtcatatgaataaaggaaatgttaattcatgagatacatta 367  Q
    |  |||||||||| |||| ||||||   |||  | |||||||| ||||  |||||| || |||||  |||||||||||| ||| |||||||||||| |||    
T  26629522 acaatgttacggtcaaaatgagaaaaacaaaaatgaaattcattttaaatgatttacaactcataacaataaaggaaatattatttcatgagatacttta 26629423  T
Q  368 aagagaaa 375  Q
    || |||||    
T  26629422 aatagaaa 26629415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 170 - 375
Target Start/End: Complemental strand, 26735598 - 26735391
Alignment:
Q  170 gcctgaatttgaaacataacatcctcatgtttatttcaacaagagaggatccactcttgaaatagtcatacaaaccattatgcagaaaccaaaaaattct 269  Q
    |||| ||||||||||||||| |||| ||||||||| ||||| ||||||||||||||||||||| |||||| ||||||||||| ||||| |||||||||||    
T  26735598 gcctaaatttgaaacataacttccttatgtttattccaacatgagaggatccactcttgaaattgtcatataaaccattatgtagaaaacaaaaaattct 26735499  T
Q  270 aatatgttacggttaaaacgagaaagttaaa--ttaaattcatcttaagagatttataagtcatatgaataaaggaaatgttaattcatgagatacatta 367  Q
    |  |||||||||| |||| ||||||   |||  | |||||||| ||||  |||||| || |||||  |||||||||||| ||| |||||||||||| |||    
T  26735498 acaatgttacggtcaaaatgagaaaaacaaaaatgaaattcattttaaatgatttacaactcataacaataaaggaaatattatttcatgagatacttta 26735399  T
Q  368 aagagaaa 375  Q
    || |||||    
T  26735398 aatagaaa 26735391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 37 - 171
Target Start/End: Original strand, 27702350 - 27702484
Alignment:
Q  37 aacggattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaac 136  Q
    ||||||||||| | ||  ||||| |||||||| ||||||||||||||||| |||||||||||||||||  | ||||||||||||||||||| |||| |||    
T  27702350 aacggattctgtgctgtaagcaacctctagacttgtcgcatgacaatgcaaatagccagatgactacatgtcgtttcctgacaatgtacagtcaaaaaac 27702449  T
Q  137 aagtaaatgcttagttttagttagagaaaagttgc 171  Q
    ||| |||| ||||||||| ||||||||||||||||    
T  27702450 aagaaaatacttagttttggttagagaaaagttgc 27702484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 38 - 170
Target Start/End: Complemental strand, 26890198 - 26890066
Alignment:
Q  38 acggattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaaca 137  Q
    |||||||||| ||||||| ||| |||||||||| || ||||||| |  | |||||||||||||||||||| ||||||||||||||||||| |||| || |    
T  26890198 acggattctgtggtgcgaacaacctctagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaa 26890099  T
Q  138 agtaaatgcttagttttagttagagaaaagttg 170  Q
    | |||||| |||||||| |||||||||||||||    
T  26890098 aataaatgtttagttttggttagagaaaagttg 26890066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 37 - 171
Target Start/End: Complemental strand, 26628146 - 26628012
Alignment:
Q  37 aacggattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaac 136  Q
    |||||||| ||  |||| ||||| |||||||||| | ||||||||||||| | ||||||||||||| |  ||||||||||||||||||||| ||||||||    
T  26628146 aacggattttgttgtgcaagcaacctctagacatcttgcatgacaatgcagagagccagatgactaaatgtggtttcctgacaatgtacagtcaaagaac 26628047  T
Q  137 aagtaaatgcttagttttagttagagaaaagttgc 171  Q
    ||  |||| ||||||||| ||||||||||||||||    
T  26628046 aaaaaaatacttagttttggttagagaaaagttgc 26628012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 73 - 167
Target Start/End: Complemental strand, 26640772 - 26640678
Alignment:
Q  73 cgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaacaagtaaatgcttagttttagttagagaaaag 167  Q
    |||||||||||||  |||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | ||||||||||    
T  26640772 cgcatgacaatgcgaatagccagatcactacagatggtttcctgacaatgtacagtcaaagaactagtaaatgcttagttttggatagagaaaag 26640678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 37 - 171
Target Start/End: Complemental strand, 26734123 - 26733989
Alignment:
Q  37 aacggattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaac 136  Q
    |||||||| ||  |||| ||||| |||||||||| | ||||||||||||| | ||||||||||||| |  ||||||||||||||||||||| ||||||||    
T  26734123 aacggattttgttgtgcaagcaacctctagacatcttgcatgacaatgcagagagccagatgactaaatgtggtttcctgacaatgtacagtcaaagaac 26734024  T
Q  137 aagtaaatgcttagttttagttagagaaaagttgc 171  Q
    ||  |||| ||||||||| ||||||||||||||||    
T  26734023 aaaaaaatacttagttttggttagagaaaagttgc 26733989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 73 - 167
Target Start/End: Complemental strand, 26746738 - 26746644
Alignment:
Q  73 cgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaacaagtaaatgcttagttttagttagagaaaag 167  Q
    |||||||||||||  |||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | ||||||||||    
T  26746738 cgcatgacaatgcgaatagccagatcactacagatggtttcctgacaatgtacagtcaaagaactagtaaatgcttagttttggatagagaaaag 26746644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 36 - 173
Target Start/End: Complemental strand, 26631594 - 26631458
Alignment:
Q  36 aaacggattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaa 135  Q
    |||||||||||| | ||||||||| |||||||||||| | | |||||||||  | ||||||||||||||||||| ||||||| ||||||||  | ||||     
T  26631594 aaacggattctgtgctgcgagcaacctctagacatgttg-aggacaatgcaagtggccagatgactacagatggcttcctgaaaatgtacattccaagag 26631496  T
Q  136 caagtaaatgcttagttttagttagagaaaagttgcct 173  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  26631495 caagtaaatgctttgttttggttagagaaaagttgcct 26631458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 36 - 173
Target Start/End: Complemental strand, 26737569 - 26737433
Alignment:
Q  36 aaacggattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaa 135  Q
    |||||||||||| | ||||||||| |||||||||||| | | |||||||||  | ||||||||||||||||||| ||||||| ||||||||  | ||||     
T  26737569 aaacggattctgtgctgcgagcaacctctagacatgttg-aggacaatgcaagtggccagatgactacagatggcttcctgaaaatgtacattccaagag 26737471  T
Q  136 caagtaaatgcttagttttagttagagaaaagttgcct 173  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  26737470 caagtaaatgctttgttttggttagagaaaagttgcct 26737433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 36 - 169
Target Start/End: Complemental strand, 26828501 - 26828368
Alignment:
Q  36 aaacggattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaa 135  Q
    ||||||||| || ||| ||||||| | ||||||||  |||||||||||||  |||||||||| |||||||||||  |||||||||||||||| |||| ||    
T  26828501 aaacggattttgtggtacgagcaaccactagacatcccgcatgacaatgcgaatagccagatcactacagatggactcctgacaatgtacagtcaaaaaa 26828402  T
Q  136 caagtaaatgcttagttttagttagagaaaagtt 169  Q
    |||| |||||||||||||| | ||||||||||||    
T  26828401 caagaaaatgcttagttttggatagagaaaagtt 26828368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 461 - 557
Target Start/End: Complemental strand, 31290965 - 31290869
Alignment:
Q  461 tggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttcgttttgccaaatcgaaacataatttaataggagaaaggtttctttat 557  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||| ||||| |||||| ||| | ||||||||    
T  31290965 tggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttccatttgccaaatcaaaacaaaatttgataggaaaaaagcttctttat 31290869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 218 - 369
Target Start/End: Complemental strand, 26966082 - 26965931
Alignment:
Q  218 atccactcttgaaatagtcatacaaaccattatgcagaaaccaaaaaattctaatatgttacggttaaaacgagaaagttaaattaaattcatcttaaga 317  Q
    ||||||| ||||||| ||||||||||| |||||||||||| ||||||||  ||| |||||||| | |||| |||||| | |||  ||| |||| ||||      
T  26966082 atccacttttgaaattgtcatacaaacgattatgcagaaaacaaaaaatcataacatgttacgctcaaaatgagaaaataaaaccaaaatcattttaaag 26965983  T
Q  318 gatttataagtcatatgaataaaggaaatgttaattcatgagatacattaaa 369  Q
     || ||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  26965982 catgtataagtcatatgtataaaggaaatattaattcatgagatacattaaa 26965931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 27652256 - 27652339
Alignment:
Q  40 ggattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgt 123  Q
    ||||| || |||||||||||| ||||||||| || |||||||||||| ||||||||||||| | ||||||||||||||||||||    
T  27652256 ggattttgtggtgcgagcaatgtctagacatatcacatgacaatgcaaatagccagatgaccatagatggtttcctgacaatgt 27652339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 31291264 - 31291166
Alignment:
Q  180 gaaacataacatcctcatgtttatttcaacaagagaggatccactcttgaaatagtcatacaaaccattatgcagaaaccaaaaaattctaatatgttac 279  Q
    |||||||||| |  |||| |||||||||||| ||||||||||||||||||||| || ||||| ||||||||||||||| | ||||||||||| |||||||    
T  31291264 gaaacataacttagtcatttttatttcaacatgagaggatccactcttgaaattgtaatacacaccattatgcagaaaac-aaaaattctaacatgttac 31291166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 27652343 - 27652405
Alignment:
Q  109 gtttcctgacaatgtacagacaaagaacaagtaaatgcttagttttagttagagaaaagttgc 171  Q
    |||||||||||||||| || ||| |||||||||||||||||||||| ||||||||||||||||    
T  27652343 gtttcctgacaatgtaaagtcaatgaacaagtaaatgcttagttttggttagagaaaagttgc 27652405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 193 - 257
Target Start/End: Original strand, 27652530 - 27652594
Alignment:
Q  193 ctcatgtttatttcaacaagagaggatccactcttgaaatagtcatacaaaccattatgcagaaa 257  Q
    |||||||||||||||||| |||||||||||||||||||||  ||||||| |||| ||||||||||    
T  27652530 ctcatgtttatttcaacatgagaggatccactcttgaaattttcatacacaccactatgcagaaa 27652594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 88 - 171
Target Start/End: Complemental strand, 31291459 - 31291376
Alignment:
Q  88 atagccagatgactacagatggtttcctgacaatgtacagacaaagaacaagtaaatgcttagttttagttagagaaaagttgc 171  Q
    |||||||||||| |||||||||||||||| ||||  |||  | ||||||||| |||| ||||||||| ||||||||||||||||    
T  31291459 atagccagatgattacagatggtttcctggcaattcacaatcgaagaacaagaaaatacttagtttttgttagagaaaagttgc 31291376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 169
Target Start/End: Complemental strand, 26853714 - 26853623
Alignment:
Q  76 atgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaacaagtaaatgcttagttttagttagagaaaagtt 169  Q
    ||||||||||| ||||||||||||| ||||||||  | ||||||||| || | |||||||||||| ||| ||||||||| ||||||||||||||    
T  26853714 atgacaatgcaaatagccagatgaccacagatgg-atactgacaatgcacggtcaaagaacaagt-aattcttagttttggttagagaaaagtt 26853623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 460 - 529
Target Start/End: Original strand, 27652757 - 27652826
Alignment:
Q  460 ttggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttcgttttgccaaatcgaaaca 529  Q
    ||||||| | |||||||||| ||||||||||||||||||||||||||||||  ||||||| ||| |||||    
T  27652757 ttggaagcataaaaccaaaattttgagttatgaaacgaaattctccacttccatttgccagatcaaaaca 27652826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 27422832 - 27422888
Alignment:
Q  426 ggagtagcagataaaagtaaattaattttttctattggaagtacaaaaccaaaactt 482  Q
    ||||||||||||  |||||||||||||||| |||||| |||||||||||||||||||    
T  27422832 ggagtagcagatcgaagtaaattaatttttcctattgtaagtacaaaaccaaaactt 27422888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 375
Target Start/End: Original strand, 27652664 - 27652711
Alignment:
Q  328 tcatatgaataaaggaaatgttaattcatgagatacattaaagagaaa 375  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||    
T  27652664 tcatatgaataaagtaaatattaattcatgagatacattaaagagaaa 27652711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 375
Target Start/End: Complemental strand, 26640411 - 26640358
Alignment:
Q  322 tataagtcatatgaataaaggaaatgttaattcatgagatacattaaagagaaa 375  Q
    |||| |||||| |||| |||||||||||||||||||||||||| ||||||||||    
T  26640411 tatatgtcatacgaatgaaggaaatgttaattcatgagatacaataaagagaaa 26640358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 375
Target Start/End: Complemental strand, 26746377 - 26746324
Alignment:
Q  322 tataagtcatatgaataaaggaaatgttaattcatgagatacattaaagagaaa 375  Q
    |||| |||||| |||| |||||||||||||||||||||||||| ||||||||||    
T  26746377 tatatgtcatacgaatgaaggaaatgttaattcatgagatacaataaagagaaa 26746324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 460 - 519
Target Start/End: Complemental strand, 26640331 - 26640274
Alignment:
Q  460 ttggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttcgttttgcca 519  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||| |||  |||||||    
T  26640331 ttggaagtacaaaaccaaaact--gagttatgaaacgaaattctccatttccatttgcca 26640274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 460 - 519
Target Start/End: Complemental strand, 26746297 - 26746240
Alignment:
Q  460 ttggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttcgttttgcca 519  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||| |||  |||||||    
T  26746297 ttggaagtacaaaaccaaaact--gagttatgaaacgaaattctccatttccatttgcca 26746240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 409 - 448
Target Start/End: Complemental strand, 26629401 - 26629362
Alignment:
Q  409 tggaagaaaaaatatatggagtagcagataaaagtaaatt 448  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  26629401 tggaagaaaaaatatatggagtagcagataaaaggaaatt 26629362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 409 - 448
Target Start/End: Complemental strand, 26735377 - 26735338
Alignment:
Q  409 tggaagaaaaaatatatggagtagcagataaaagtaaatt 448  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  26735377 tggaagaaaaaatatatggagtagcagataaaaggaaatt 26735338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 502
Target Start/End: Original strand, 27506761 - 27506803
Alignment:
Q  460 ttggaagtacaaaaccaaaactttgagttatgaaacgaaattc 502  Q
    ||||||||||||||||||||||||||| |||||||||| ||||    
T  27506761 ttggaagtacaaaaccaaaactttgagctatgaaacgatattc 27506803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 135
Target Start/End: Original strand, 27588393 - 27588487
Alignment:
Q  41 gattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaa 135  Q
    ||||||| |||| || | ||||||| |||| ||| ||||||| ||  | |||||||  ||||||||||||||||||||||| ||||| |||||||    
T  27588393 gattctgtggtgtgaaccatctctacacatctcgaatgacaacgccgaaagccagacaactacagatggtttcctgacaatatacagtcaaagaa 27588487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 548
Target Start/End: Complemental strand, 26964086 - 26964021
Alignment:
Q  483 tgagttatgaaacgaaattctccacttcgttttgccaaatcgaaacataatttaataggagaaagg 548  Q
    |||||||||||| |||||||||||||||  ||||| || |||||||| ||||| |||||| |||||    
T  26964086 tgagttatgaaaggaaattctccacttccatttgcaaattcgaaacaaaatttgataggaaaaagg 26964021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 418
Target Start/End: Complemental strand, 28783694 - 28783611
Alignment:
Q  335 aataaaggaaatgttaattcatgagatacattaaagagaaacaaagtaccaatttgtaagacttcaaaatgaaatggaagaaaa 418  Q
    |||||||||||| ||||  ||||||||||||||||||||||    | ||| |||||| ||| ||| ||| ||||||||||||||    
T  28783694 aataaaggaaatattaaaccatgagatacattaaagagaaatgttgaaccgatttgtcagaattccaaaagaaatggaagaaaa 28783611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 28790250 - 28790203
Alignment:
Q  77 tgacaatgcacatagccagatgactacagatggtttcctgacaatgta 124  Q
    |||||| ||| | ||||||| |||||||||||||||||||||||||||    
T  28790250 tgacaacgcaaaaagccagacgactacagatggtttcctgacaatgta 28790203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 553
Target Start/End: Complemental strand, 26650845 - 26650775
Alignment:
Q  483 tgagttatgaaacgaaattctccacttcgttttgccaaatcgaaacataatttaataggagaaaggtttct 553  Q
    |||||||||||| |||||||||||||||  ||||| || |||||||| ||||| || ||| ||||| ||||    
T  26650845 tgagttatgaaaggaaattctccacttccatttgcaaattcgaaacaaaatttgattggaaaaaggcttct 26650775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 553
Target Start/End: Complemental strand, 26756813 - 26756743
Alignment:
Q  483 tgagttatgaaacgaaattctccacttcgttttgccaaatcgaaacataatttaataggagaaaggtttct 553  Q
    |||||||||||| |||||||||||||||  ||||| || |||||||| ||||| || ||| ||||| ||||    
T  26756813 tgagttatgaaaggaaattctccacttccatttgcaaattcgaaacaaaatttgattggaaaaaggcttct 26756743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 455
Target Start/End: Original strand, 27606872 - 27606969
Alignment:
Q  358 agatacattaaagagaaacaaagtaccaatttgtaag-acttcaaaatgaaatggaagaaaaaatatatggagtagcagataaaagtaaattaattttt 455  Q
    ||||||||||||||||||    | ||||||||||||| |||| ||||| |||| |||||||||| |||   ||||| ||||||||||| ||||||||||    
T  27606872 agatacattaaagagaaatgtcgaaccaatttgtaagaacttaaaaat-aaatagaagaaaaaagataacaagtaggagataaaagtatattaattttt 27606969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 171
Target Start/End: Original strand, 27712683 - 27712817
Alignment:
Q  38 acggattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaaca 137  Q
    |||||||||| |||  |||| | || ||||||| ||| ||||||||||| | |||||||  |||| |||||||||  || |||||||||   |||||| |    
T  27712683 acggattctgtggtttgagccacctatagacatctcgtatgacaatgcaaaaagccagacaactatagatggttttttgtcaatgtacaataaaagaaga 27712782  T
Q  138 agtaaatgcttagtt-ttagttagagaaaagttgc 171  Q
    | |  ||||||||||  ||||||||||||||||||    
T  27712783 aatggatgcttagttaatagttagagaaaagttgc 27712817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 31289450 - 31289405
Alignment:
Q  37 aacggattctgcggtgcgagcaatctctagacatgtcgcatgacaa 82  Q
    ||||||||||| | ||||||||| | ||||||||||||||||||||    
T  31289450 aacggattctgtgctgcgagcaaccactagacatgtcgcatgacaa 31289405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 26807333 - 26807297
Alignment:
Q  91 gccagatgactacagatggtttcctgacaatgtacag 127  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  26807333 gccagacgactacagatggtttcctgacaaagtacag 26807297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 37 - 368
Target Start/End: Complemental strand, 64859 - 64532
Alignment:
Q  37 aacggattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaac 136  Q
    ||||||||||  | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  64859 aacggattctatgctgcgagcaatctctagacatgtcgcatgacaatgcaaatagccagatgactacagatggtttcctgacaatgtacagacaaagaac 64760  T
Q  137 aagtaaatgcttagttttagttagagaaaagttgcctgaatttgaaacataacatcctcatgtttatttcaacaagagaggatccactcttgaaatagtc 236  Q
    |||||||||||||||||| |||||||||||||||||||| ||| ||||||||  || | ||||||||||||||||||||| ||||||||||||||| |||    
T  64759 aagtaaatgcttagttttcgttagagaaaagttgcctgagtttcaaacataatttctttatgtttatttcaacaagagagaatccactcttgaaattgtc 64660  T
Q  237 atacaaaccattatgcagaaaccaaaaaattctaatatgttacggttaaaacgagaaagttaaattaaattcatcttaagagatttataagtcatatgaa 336  Q
    ||||||||||||||||||||| ||||||||||| | |||||||||| |||| |||||| | |||| |||||||  |||| | ||| |||| |||||||      
T  64659 atacaaaccattatgcagaaaacaaaaaattctgacatgttacggtcaaaatgagaaaataaaatgaaattcagtttaaaatattaataaatcatatg-- 64562  T
Q  337 taaaggaaatgttaattcatgagatacattaa 368  Q
      |||||||| | ||||| |||||||||||||    
T  64561 --aaggaaatatgaattcttgagatacattaa 64532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 64531 - 64475
Alignment:
Q  426 ggagtagcagataaaagtaaattaattttttctattggaagtacaaaaccaaaactt 482  Q
    ||||||||||||  |||||||||||||||| |||||| |||||||||||||||||||    
T  64531 ggagtagcagatcgaagtaaattaatttttcctattgtaagtacaaaaccaaaactt 64475  T

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Target: scaffold0349 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 37 - 171
Target Start/End: Complemental strand, 17827 - 17693
Alignment:
Q  37 aacggattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaac 136  Q
    ||||||||||||| ||  ||||| |||||||| ||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||| ||||||||    
T  17827 aacggattctgcgctgtaagcaacctctagacttgtcgcatgacaatgcaaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaac 17728  T
Q  137 aagtaaatgcttagttttagttagagaaaagttgc 171  Q
    ||| |||| ||||||||| ||||||||||||||||    
T  17727 aagaaaatacttagttttggttagagaaaagttgc 17693  T

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Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 36 - 171
Target Start/End: Original strand, 29270009 - 29270144
Alignment:
Q  36 aaacggattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaa 135  Q
    ||||||||| || | || |||||| |||||||| ||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||| |||||||    
T  29270009 aaacggattatgtgctgtgagcaacctctagacttgtcgcatgacaatgcaaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaa 29270108  T
Q  136 caagtaaatgcttagttttagttagagaaaagttgc 171  Q
    |||| |||| ||||||||| ||||||||||||||||    
T  29270109 caagaaaatacttagttttggttagagaaaagttgc 29270144  T

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Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 180 - 262
Target Start/End: Original strand, 18692628 - 18692710
Alignment:
Q  180 gaaacataacatcctcatgtttatttcaacaagagaggatccactcttgaaatagtcatacaaaccattatgcagaaaccaaa 262  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||| ||||    
T  18692628 gaaacataacgtcctcatgtttatttcaacatgagaggatccactcttgaaattgtcatacacaccattatgcagaaaacaaa 18692710  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 61 - 171
Target Start/End: Complemental strand, 5083197 - 5083085
Alignment:
Q  61 ctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaacaagtaaatgcttagttt-tagtt- 158  Q
    |||||||||| ||| ||||||||||| | |||||||  |||||||||||||| ||| ||||||||||  |||||| || | |||||||||||| |||||     
T  5083197 ctctagacatctcgtatgacaatgcaaaaagccagacaactacagatggttttctgtcaatgtacagtaaaagaagaaatgaatgcttagtttatagtta 5083098  T
Q  159 agagaaaagttgc 171  Q
    |||||||||||||    
T  5083097 agagaaaagttgc 5083085  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 459 - 510
Target Start/End: Original strand, 18719305 - 18719354
Alignment:
Q  459 attggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttc 510  Q
    |||||||||||||||||||||||  || ||||||||||||||||||||||||    
T  18719305 attggaagtacaaaaccaaaact--gacttatgaaacgaaattctccacttc 18719354  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 18674557 - 18674597
Alignment:
Q  180 gaaacataacatcctcatgtttatttcaacaagagaggatc 220  Q
    |||||||||| |||||||||||||||||||| |||||||||    
T  18674557 gaaacataacgtcctcatgtttatttcaacatgagaggatc 18674597  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 510
Target Start/End: Original strand, 18674703 - 18674751
Alignment:
Q  460 ttggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttc 510  Q
    |||||||||||||||||||||  ||| |||||||| |||||||||||||||    
T  18674703 ttggaagtacaaaaccaaaac--tgatttatgaaatgaaattctccacttc 18674751  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 463 - 510
Target Start/End: Original strand, 18692787 - 18692832
Alignment:
Q  463 gaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttc 510  Q
    |||||||||||||||||||  || |||||||| |||||||||||||||    
T  18692787 gaagtacaaaaccaaaact--gatttatgaaatgaaattctccacttc 18692832  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 26141288 - 26141211
Alignment:
Q  61 ctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaacaa 138  Q
    |||||||||| | | ||||||||||| |||||||||  |||| ||||||||| |||||||||||||  ||||||||||    
T  26141288 ctctagacatctagaatgacaatgcaaatagccagacaactatagatggttttctgacaatgtacattcaaagaacaa 26141211  T

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Target: scaffold0277 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 816 - 874
Alignment:
Q  77 tgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaa 135  Q
    |||||| ||| | ||||||| |||||||||||||||||||||||||||| | |||||||    
T  816 tgacaacgcaaaaagccagacgactacagatggtttcctgacaatgtactgtcaaagaa 874  T

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Target: scaffold0277; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 9949 - 9996
Alignment:
Q  77 tgacaatgcacatagccagatgactacagatggtttcctgacaatgta 124  Q
    |||||| ||| | ||||||| |||||||||||||||||||||||||||    
T  9949 tgacaacgcaaaaagccagacgactacagatggtttcctgacaatgta 9996  T

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Target: scaffold0419 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 11396 - 11349
Alignment:
Q  77 tgacaatgcacatagccagatgactacagatggtttcctgacaatgta 124  Q
    |||||| ||| | ||||||| |||||||||||||||||||||||||||    
T  11396 tgacaacgcaaaaagccagacgactacagatggtttcctgacaatgta 11349  T

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