View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14962_high_3 (Length: 302)
Name: NF14962_high_3
Description: NF14962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14962_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 95 - 297
Target Start/End: Original strand, 35977699 - 35977901
Alignment:
| Q |
95 |
ttcttcacaataatcttatatatgttcatgtgataaccatagtagtgggagtgaaagtgaaaatgtacaagtcgaggctgcaggagttttgtcaccggag |
194 |
Q |
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| T |
35977699 |
ttcttcacaataatcttatatatgttcatgtgataaccatagtagtgggagtgaaagtgaaaatgtacaagtcgaggctgcaggagttttgtcaccggag |
35977798 |
T |
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| Q |
195 |
aaagtggagtttgcctgaatactcttccatatatgttgatggtccaccacacaatccaagttttaagggctctgtctttgtcaatggtttaacctttgct |
294 |
Q |
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| T |
35977799 |
aaagtggagtttgcctgaatactcttccatatatgttgatggtccaccacacaatccaagttttaagggctctgtctttgtcaatggtttaacctttact |
35977898 |
T |
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| Q |
295 |
tct |
297 |
Q |
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||| |
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| T |
35977899 |
tct |
35977901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 150 - 297
Target Start/End: Original strand, 35967567 - 35967714
Alignment:
| Q |
150 |
agtgaaaatgtacaagtcgaggctgcaggagttttgtcaccggagaaagtggagtttgcctgaatactcttccatatatgttgatggtccaccacacaat |
249 |
Q |
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| T |
35967567 |
agtgaaaatgaataagatgaggctgcaggagctttgtcaccaaagaaagtggagtttgcctaagtactctgccttgaatgtcgatggtccaccacacaaa |
35967666 |
T |
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| Q |
250 |
ccaagttttaagggctctgtctttgtcaatggtttaacctttgcttct |
297 |
Q |
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| T |
35967667 |
ccaagctttaagggctctgtctttgtcaatggtttaacctttacttct |
35967714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 142 - 281
Target Start/End: Original strand, 35955125 - 35955264
Alignment:
| Q |
142 |
ggagtgaaagtgaaaatgtacaagtcgaggctgcaggagttttgtcaccggagaaagtggagtttgcctgaatactcttccatatatgttgatggtccac |
241 |
Q |
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| T |
35955125 |
ggagtgtaagtgaaaatgcacaagtcaaaactgcaggagctgtgtcaccggagacggtggagtttgcctaagtattctgcctttcatgttgacggtccac |
35955224 |
T |
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| Q |
242 |
cacacaatccaagttttaagggctctgtctttgtcaatgg |
281 |
Q |
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| T |
35955225 |
cacacaatccaagctttaagggctctgtttttgtgaatgg |
35955264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 35977648 - 35977700
Alignment:
| Q |
19 |
gtactactaacattcacatggttaatattgttagtttcacatggttcctcatt |
71 |
Q |
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| T |
35977648 |
gtactactaacattcacatggttaatattgttagtttcacatggttcctcatt |
35977700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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