View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14962_low_1 (Length: 453)

Name: NF14962_low_1
Description: NF14962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14962_low_1
NF14962_low_1
[»] chr1 (4 HSPs)
chr1 (1-141)||(50589768-50589909)
chr1 (146-239)||(50590242-50590335)
chr1 (11-141)||(19598093-19598225)
chr1 (407-438)||(50590520-50590551)
[»] chr4 (6 HSPs)
chr4 (11-93)||(28966393-28966476)
chr4 (41-116)||(12295595-12295670)
chr4 (14-108)||(46699308-46699403)
chr4 (7-83)||(8254531-8254608)
chr4 (7-83)||(8267949-8268026)
chr4 (11-117)||(38929294-38929401)
[»] chr2 (5 HSPs)
chr2 (146-239)||(16959021-16959114)
chr2 (2-71)||(2062386-2062456)
chr2 (70-117)||(16959470-16959517)
chr2 (42-116)||(22885894-22885968)
chr2 (43-97)||(27739348-27739402)
[»] chr5 (1 HSPs)
chr5 (39-93)||(27712604-27712658)


Alignment Details
Target: chr1 (Bit Score: 118; Significance: 5e-60; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 50589768 - 50589909
Alignment:
Q  1 gcatcaccatcaccacccccaccactacaacaccacgg-tcagcaagcacaagagcaagacaacgaggttgatagtcttcaaggaaagtagcaacatcac 99  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  50589768 gcatcaccatcaccacccccaccactacaacaccacggatcagcaagcacaagagcaagacaacaaggttgatagtcttcaaggaaagcagcaacatcac 50589867  T
Q  100 tatagcattttgaagaaaaaatcacagcggatatactcacaa 141  Q
    |||||||||| |||||||||||||||| ||||||||||||||    
T  50589868 tatagcatttcgaagaaaaaatcacagtggatatactcacaa 50589909  T

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Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 146 - 239
Target Start/End: Original strand, 50590242 - 50590335
Alignment:
Q  146 cgactcaagatcacgcagatgaaacagaaacttttaaggtaccacaacaatattgcgtccaagttgcaccagacacacaaacaaccagtttatt 239  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50590242 cgactcaagatcacgcagatgaaacaaaaacttttaaggtaccacaacaatattgcgtccaagttgcaccagacacacaaacaaccagtttatt 50590335  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 19598225 - 19598093
Alignment:
Q  11 caccacccccaccactacaacaccacggt-cagcaagcacaagagcaagacaacgaggttgatagtcttcaaggaaagtagc-aacatcactatagcatt 108  Q
    ||||||| ||||| || ||||||||| || || ||  ||||||||||||||||||||||| |  |||| ||||||||| ||| |||||||| ||||||||    
T  19598225 caccacctccacctctgcaacaccactgttcaacagacacaagagcaagacaacgaggtttaatgtctccaaggaaagcagcaaacatcaccatagcatt 19598126  T
Q  109 ttgaagaaaaaatcacagcggatatactcacaa 141  Q
     |||||||  || ||||  | ||||||||||||    
T  19598125 ctgaagaatcaaccacaaagaatatactcacaa 19598093  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 438
Target Start/End: Original strand, 50590520 - 50590551
Alignment:
Q  407 ccaccgtaaaaggaataacaacaccaaagaat 438  Q
    ||||||||||||||||||||||||||||||||    
T  50590520 ccaccgtaaaaggaataacaacaccaaagaat 50590551  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 28966476 - 28966393
Alignment:
Q  11 caccacccccaccactacaacaccacggt-cagcaagcacaagagcaagacaacgaggttgatagtcttcaaggaaagtagcaa 93  Q
    ||||||| ||||| || |||||||||||| |||||  ||||||||||||||||||||||||| ||||| |||||||||||||||    
T  28966476 caccaccaccacccctgcaacaccacggttcagcagacacaagagcaagacaacgaggttgaaagtctccaaggaaagtagcaa 28966393  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 12295670 - 12295595
Alignment:
Q  41 agcaagcacaagagcaagacaacgaggttgatagtcttcaaggaaagtagcaacatcactatagcattttgaagaa 116  Q
    ||||||||||||||||||||| ||||| | | ||||| |||| |||| || |||||||| |||||||| |||||||    
T  12295670 agcaagcacaagagcaagacagcgaggctaaaagtctccaagaaaagcagtaacatcaccatagcattctgaagaa 12295595  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 46699308 - 46699403
Alignment:
Q  14 cacccccaccactacaacaccacggt-cagcaagcacaagagcaagacaacgaggttgatagtcttcaaggaaagtagcaacatcactatagcatt 108  Q
    |||| |||||||| ||||||||  || |||||||||||||||||||| | ||||| ||| |||||  |||||||| ||||||||||| ||| ||||    
T  46699308 caccaccaccactgcaacaccattgttcagcaagcacaagagcaagatagcgaggctgaaagtctcgaaggaaagcagcaacatcaccataacatt 46699403  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 8254608 - 8254531
Alignment:
Q  7 ccatcaccacccccaccactacaacaccacggt-cagcaagcacaagagcaagacaacgaggttgatagtcttcaagg 83  Q
    ||||| ||||| ||||| || |||||||| ||| ||||| | ||||||||||||||| |||||||||||||| |||||    
T  8254608 ccatccccaccaccacccctgcaacaccaaggttcagcaggaacaagagcaagacaatgaggttgatagtctccaagg 8254531  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 8268026 - 8267949
Alignment:
Q  7 ccatcaccacccccaccactacaacaccacggt-cagcaagcacaagagcaagacaacgaggttgatagtcttcaagg 83  Q
    ||||| ||||| ||||| || |||||||| ||| ||||| | ||||||||||||||| |||||||||||||| |||||    
T  8268026 ccatccccaccaccacccctgcaacaccaaggttcagcaggaacaagagcaagacaatgaggttgatagtctccaagg 8267949  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 38929401 - 38929294
Alignment:
Q  11 caccacccccaccactacaacaccacgg-tcagcaagcacaagagcaagacaacgaggttgatagtcttcaaggaaagtagc-aacatcactatagcatt 108  Q
    ||||||| ||||| || ||||||||||| | |||| ||||||| |||||| || |||||||| ||||| ||||| ||| ||| |||||||| ||||||||    
T  38929401 caccaccaccacccctgcaacaccacggttaagcatgcacaagtgcaagaaaatgaggttga-agtctccaaggcaagcagcaaacatcaccatagcatt 38929303  T
Q  109 ttgaagaaa 117  Q
      |||||||    
T  38929302 ccgaagaaa 38929294  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 239
Target Start/End: Complemental strand, 16959114 - 16959021
Alignment:
Q  146 cgactcaagatcacgcagatgaaacagaaacttttaaggtaccacaacaatattgcgtccaagttgcaccagacacacaaacaaccagtttatt 239  Q
    ||||||||||||| |||||||||||  ||| |||||||| || | ||||||||||  ||||||||  || ||||||||||||||||| ||||||    
T  16959114 cgactcaagatcatgcagatgaaacgtaaatttttaaggaacaataacaatattgtctccaagttttacgagacacacaaacaaccaatttatt 16959021  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 2062456 - 2062386
Alignment:
Q  2 catcaccatcaccacccccaccactacaacaccacggt-cagcaagcacaagagcaagacaacgaggttga 71  Q
    |||||||| | |||||||||||||| ||||||||| || |||||||||||||||||||||| | |||||||    
T  2062456 catcaccacccccacccccaccactgcaacaccacagttcagcaagcacaagagcaagacagctaggttga 2062386  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 16959517 - 16959470
Alignment:
Q  70 gatagtcttcaaggaaagtagcaacatcactatagcattttgaagaaa 117  Q
    |||||||||||||||||| | ||||||| | |||||||||||||||||    
T  16959517 gatagtcttcaaggaaagcaacaacatccccatagcattttgaagaaa 16959470  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 22885894 - 22885968
Alignment:
Q  42 gcaagcacaagagcaagacaacgaggttgatagtcttcaaggaaagtagcaacatcactatagcattttgaagaa 116  Q
    |||||||||||||||||||||| || |||| |||||  |||||||| || |||||| |  |||||||| ||||||    
T  22885894 gcaagcacaagagcaagacaacaagattgaaagtctctaaggaaagcaggaacatcgccttagcatttcgaagaa 22885968  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 27739402 - 27739348
Alignment:
Q  43 caagcacaagagcaagacaacgaggttgatagtcttcaaggaaagtagcaacatc 97  Q
    ||||||||||||||||||||| ||| | | ||||| ||||||||| |||||||||    
T  27739402 caagcacaagagcaagacaacaaggcttaaagtctccaaggaaagcagcaacatc 27739348  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 27712658 - 27712604
Alignment:
Q  39 tcagcaagcacaagagcaagacaacgaggttgatagtcttcaaggaaagtagcaa 93  Q
    |||||| |||||||||||| ||||||||||||| |||||  |||||||| |||||    
T  27712658 tcagcaggcacaagagcaatacaacgaggttgaaagtctctaaggaaagaagcaa 27712604  T

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