View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14962_low_2 (Length: 365)
Name: NF14962_low_2
Description: NF14962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14962_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 25 - 333
Target Start/End: Original strand, 18488299 - 18488607
Alignment:
| Q |
25 |
tagtcaaatattcatatcgagcacaatcaactcataaaaggaacaaatcttcataatatagcccaaatcaacattcttttnnnnnnnnnnnnnngcaata |
124 |
Q |
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| T |
18488299 |
tagtcgaatattcatatcgagcacaatcaactcataaaaggaacaaatcttcataacatagcccaaatcaccattctttttaaaaaaa------gcaata |
18488392 |
T |
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| Q |
125 |
attcaataacgaatacggattagattaaccaaaattactttagccacaaaatttaatttaattatttaaaatcatttcaaccttcactatgactatg--- |
221 |
Q |
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| T |
18488393 |
aatcaataacgaatacatattagattaaccaaaattactttaaccacaaaattaaatttaattatttaaaatcatttcaaccttcaatatgactatgtat |
18488492 |
T |
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| Q |
222 |
---gacaaaatcctattacactcctatcatatatattgtgaattttattttactatataaagaattattttttgtcattatacatcaagtttagaaagga |
318 |
Q |
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| T |
18488493 |
atggacaaaatcctattacacacttatcatatatattgtgaattttattttactatataaagaattattttttgtcattatacatcaagtttagaaagga |
18488592 |
T |
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| Q |
319 |
tatattcaaaatata |
333 |
Q |
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| T |
18488593 |
tatattcaaaatata |
18488607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 12172351 - 12172429
Alignment:
| Q |
131 |
taacgaatacggattagattaaccaaaattactttagccacaaaatttaatttaattatttaaaatcatttcaaccttc |
209 |
Q |
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| T |
12172351 |
taacgaatacgtattatatttaccaaaattactttagctacaaaattaaattaaattagttaaaatcatttcaaccttc |
12172429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 18189035 - 18189117
Alignment:
| Q |
18 |
ataccaatagtcaaatattcatatcgagcacaatcaactcataaaaggaacaaatcttcataatatagcccaaatcaacattc |
100 |
Q |
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| T |
18189035 |
ataccagtggtcaaatattcatatcgagcacaatcgactcatataaggaacaaatcttcattacacagcataaatcaacattc |
18189117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 18207362 - 18207421
Alignment:
| Q |
150 |
taaccaaaattactttagccacaaaatttaatttaattatttaaaatcatttcaaccttc |
209 |
Q |
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| T |
18207362 |
taaccaaaattactttagccacaaaattagatttaattagttaagatcatttcaaccttc |
18207421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 254 - 321
Target Start/End: Original strand, 18207506 - 18207577
Alignment:
| Q |
254 |
ttgtgaattttattttactatataa---agaattattttttgtcattatac-atcaagtttagaaaggatat |
321 |
Q |
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| T |
18207506 |
ttgtgaattttattttactatataataaagaattattttttgtcattatactatcaattttataaaggatat |
18207577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 12172224 - 12172283
Alignment:
| Q |
18 |
ataccaatagtcaaatattcatatcgagcacaatcaactcataaaaggaacaaatcttcat |
78 |
Q |
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| T |
12172224 |
atactaatggtcaaatattcatatcgagcacaatc-actcataacaggaacaaatcttcat |
12172283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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