View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14962_low_3 (Length: 358)
Name: NF14962_low_3
Description: NF14962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14962_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 27359772 - 27360137
Alignment:
| Q |
1 |
tatttatttttaaaaatatatagaacaattactgatgttgtctgttgtgttgtgatcgtgtattgctacaaatgccgaaaacaaacaaaaattaggtcgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27359772 |
tatttatttttaaaaatatatagaacaattactgatgttgtttgttgtgttgtgatcgtgtattgctacaaatgccgaaaacaaacaaaaattaggtcgg |
27359871 |
T |
|
| Q |
101 |
gtcacatatcaaatcacttcttataaaacgttatgcaactgtgactcgtatgtgcaaca-ttgtctttcccaagataaaacatactccaaaattaagaaa |
199 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27359872 |
gtcacatatcaaatcatttcttataaaacgttatgcaactgtgactcgtatgtgcaacatttgtctttcccaagataaaacatacttcaaaattaagaaa |
27359971 |
T |
|
| Q |
200 |
aatgtttgtta-----------aggtgtacaccttgagaggagcattctctgcacaaaagaacccaacattccaacacctagaaaaatactcttttttat |
288 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27359972 |
aatgtttgttaaacacctcaataggtgtacaccttgagaggagcattctctgcacaaaagaacccaacattccaacaccttgaaaaatactcttttttat |
27360071 |
T |
|
| Q |
289 |
aaccagcagaaacaact-attatattaaacaaggtgtacaatggatacaacacagaagaagagaaa |
353 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27360072 |
aaccagcagaaacaactaattatattaaacaaggtgtacaatggatacaacacagaagaagagaaa |
27360137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University