View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14963_high_1 (Length: 694)

Name: NF14963_high_1
Description: NF14963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14963_high_1
NF14963_high_1
[»] chr2 (9 HSPs)
chr2 (190-511)||(15675687-15676019)
chr2 (18-150)||(15674475-15674606)
chr2 (567-684)||(15650112-15650232)
chr2 (431-524)||(17841688-17841786)
chr2 (128-176)||(15674623-15674671)
chr2 (464-525)||(12698867-12698928)
chr2 (307-437)||(4622773-4622903)
chr2 (431-511)||(4622654-4622739)
chr2 (252-290)||(4622931-4622969)
[»] chr4 (11 HSPs)
chr4 (307-511)||(221389-221597)
chr4 (431-524)||(46394976-46395072)
chr4 (431-511)||(1143290-1143375)
chr4 (382-437)||(1143410-1143465)
chr4 (383-436)||(18906331-18906384)
chr4 (468-511)||(34442390-34442433)
chr4 (383-437)||(46395107-46395161)
chr4 (431-511)||(52597016-52597105)
chr4 (309-349)||(52597218-52597258)
chr4 (307-357)||(46395194-46395244)
chr4 (248-292)||(46395270-46395314)
[»] chr5 (8 HSPs)
chr5 (307-434)||(16855532-16855659)
chr5 (431-511)||(15921401-15921486)
chr5 (431-511)||(16855678-16855764)
chr5 (431-511)||(28247111-28247194)
chr5 (435-511)||(32903656-32903737)
chr5 (309-524)||(26502934-26503165)
chr5 (383-437)||(15921522-15921576)
chr5 (309-355)||(28247320-28247366)
[»] chr6 (2 HSPs)
chr6 (434-524)||(4333979-4334074)
chr6 (431-511)||(32923246-32923330)
[»] chr3 (8 HSPs)
chr3 (310-437)||(3858343-3858471)
chr3 (434-525)||(44791190-44791286)
chr3 (431-511)||(3858223-3858308)
chr3 (431-511)||(26041842-26041925)
chr3 (435-511)||(29808238-29808319)
chr3 (382-437)||(44791096-44791152)
chr3 (299-357)||(44791009-44791067)
chr3 (386-427)||(26041759-26041800)
[»] chr8 (4 HSPs)
chr8 (435-524)||(41137786-41137880)
chr8 (431-511)||(6801259-6801344)
chr8 (431-482)||(33359232-33359288)
chr8 (382-447)||(33359141-33359207)
[»] chr7 (11 HSPs)
chr7 (431-511)||(778657-778742)
chr7 (302-447)||(45885440-45885586)
chr7 (431-511)||(43127108-43127191)
chr7 (382-427)||(38032401-38032446)
chr7 (302-359)||(38032480-38032537)
chr7 (382-437)||(778777-778832)
chr7 (382-437)||(21859453-21859508)
chr7 (434-511)||(21859335-21859417)
chr7 (396-437)||(2455884-2455925)
chr7 (472-525)||(38032230-38032283)
chr7 (252-292)||(21237109-21237149)
[»] chr1 (8 HSPs)
chr1 (431-511)||(51004110-51004195)
chr1 (434-511)||(16543851-16543933)
chr1 (464-511)||(17145309-17145356)
chr1 (431-524)||(3303248-3303344)
chr1 (382-437)||(51004230-51004285)
chr1 (307-421)||(17145366-17145479)
chr1 (390-447)||(17586450-17586507)
chr1 (309-357)||(3303464-3303512)


Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-119; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 190 - 511
Target Start/End: Original strand, 15675687 - 15676019
Alignment:
Q  190 acaaccaaaagaaaactatcgcaacatcaatacaaactagggatgtcaatgtgtatgaataatatgatacccgtcaccgtcccattggataaatatgata 289  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| || |||||||||||||||||    
T  15675687 acaaccaaaagaaaactatcacaacatcaatacaaactagggatgtcaatgggtatggataatatgatacccgtcaccgccctattggataaatatgata 15675786  T
Q  290 cccatatct-----------tcatggacacccactatgcgggtacccgcgggtattgaggtatctatggatattcatggatttttaaatttgtttannnn 378  Q
    ||| || |            |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||        
T  15675787 cccgtacccgccccgtaccctcatgggcacccactatgcgggtacccgcgggtattgaggtatctatggatatccatggatttttgaatttatttatttt 15675886  T
Q  379 nnngtacaaataataactttttctaattaccaaaaaatttcaacttttagacatccatagaaaattcatgattcttatataatccatatgttttatgatg 478  Q
       ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15675887 tttgtacaaataataactttttttaattaccaaaaaacttcaacttttagacatccatagaaaattcatgattcttatataatccatatgttttatgatg 15675986  T
Q  479 tgaatgaagtggaaatggtgaacttaataagat 511  Q
    |||||||||||||||||||||||||||||||||    
T  15675987 tgaatgaagtggaaatggtgaacttaataagat 15676019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 15674475 - 15674606
Alignment:
Q  18 aaagggttttgttttgatttagagatttaactacaattagaattcttggaatcccctctaacttctaggtcggattagtgcatgttcctagatcaataac 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||  ||||| ||||||||||||||||||||||||||||||||    
T  15674475 aaagggttttgttttgatttagagatttaactacaattagaattcttgaactcccctctat-ttctacgtcggattagtgcatgttcctagatcaataac 15674573  T
Q  118 tactcaaggtttatatccaaaatgcttaactaa 150  Q
    ||||||| |||||||||||||||||||||||||    
T  15674574 tactcaaagtttatatccaaaatgcttaactaa 15674606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 567 - 684
Target Start/End: Original strand, 15650112 - 15650232
Alignment:
Q  567 aactgacaaattaact-tggaagacttgttagattaattttgtnnnnnnntaaaatatagtgtttgattgttaaagacccttggagacaaattactccaa 665  Q
    |||||||| ||||||  ||||||||||||||||||||||||||       ||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  15650112 aactgacagattaacaatggaagacttgttagattaattttgtaaaaagataaaataaagtgtttgattgttaaagccccttggagacaaattactccaa 15650211  T
Q  666 --ggggcaaggatcacctatg 684  Q
      |||||||||| ||||||||    
T  15650212 ggggggcaaggaccacctatg 15650232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 431 - 524
Target Start/End: Complemental strand, 17841786 - 17841688
Alignment:
Q  431 atccatagaaaattcatgattcttatataatccata-----tgttttatgatgtgaatgaagtggaaatggtgaacttaataagatttattaaagaaat 524  Q
    ||||||| ||||||||||||||||| ||||||||||     ||||||||||||||||| |||||||||||||||||||||||||||  |||||| ||||    
T  17841786 atccatataaaattcatgattcttacataatccataggatatgttttatgatgtgaataaagtggaaatggtgaacttaataagatgaattaaaaaaat 17841688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 15674623 - 15674671
Alignment:
Q  128 ttatatccaaaatgcttaactaattcttggatgttttaatgttagatgt 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15674623 ttatatccaaaatgcttaactaattcttggatgttttaatgttagatgt 15674671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 464 - 525
Target Start/End: Complemental strand, 12698928 - 12698867
Alignment:
Q  464 atatgttttatgatgtgaatgaagtggaaatggtgaacttaataagatttattaaagaaata 525  Q
    ||||| |||||||||||||||||||||||| ||| |||||||||||||  |||||| |||||    
T  12698928 atatgctttatgatgtgaatgaagtggaaacggtaaacttaataagatgaattaaaaaaata 12698867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 307 - 437
Target Start/End: Complemental strand, 4622903 - 4622773
Alignment:
Q  307 acccactatgcgggtacccgcgggtattgaggtatctatggatattcatggatttttaaatttgtttannnnnnngtacaaataataac-tttttctaat 405  Q
    |||||||||| ||||| ||| ||||||||||||||  |||| |||  |||||||||| ||||| ||||       |||||||||||||| ||||| ||||    
T  4622903 acccactatgtgggtatccgtgggtattgaggtattcatgg-tatcaatggatttttgaatttatttattttttagtacaaataataacttttttttaat 4622805  T
Q  406 taccaaaaaatttcaacttttagacatccata 437  Q
    || ||||| | ||||||||||| |||| ||||    
T  4622804 tatcaaaagacttcaacttttaaacattcata 4622773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 431 - 511
Target Start/End: Complemental strand, 4622739 - 4622654
Alignment:
Q  431 atccatagaaaattcatgattcttatataatccata-----tgttttatgatgtgaatgaagtggaaatggtgaacttaataagat 511  Q
    ||||||||| |||||||||||||||  |||||||||     ||||||||||| |||| ||| || ||| |||||||||||||||||    
T  4622739 atccatagataattcatgattcttacctaatccatagaatatgttttatgatttgaacgaaatgaaaacggtgaacttaataagat 4622654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 252 - 290
Target Start/End: Complemental strand, 4622969 - 4622931
Alignment:
Q  252 tatgatacccgtcaccgtcccattggataaatatgatac 290  Q
    ||||||||||||| ||| |||||||||||||||||||||    
T  4622969 tatgatacccgtctccgccccattggataaatatgatac 4622931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 307 - 511
Target Start/End: Complemental strand, 221597 - 221389
Alignment:
Q  307 acccactatgcgggtacccgcgggtattgaggtatctatggatattcatggatttttaaatttgtttannnnnnngtacaaataataactttttctaatt 406  Q
    |||||||||||||||||||| ||||||||||| ||| |||| ||  ||||||||||| ||||| ||||       |||||||||| |||||||| |||||    
T  221597 acccactatgcgggtacccgtgggtattgagggatccatgggtacccatggatttttgaatttatttatttttttgtacaaataaaaactttttttaatt 221498  T
Q  407 accaaaaaatttcaacttttagacatccatagaaaa-ttcatgattcttatataatcca-----tatgttttatgatgtgaatgaagtggaaatggtgaa 500  Q
    ||||||| | ||||||||||| ||||||||| |||| ||||| | ||  | ||||||||     |||||||||||| |||||||||||||||| | | ||    
T  221497 accaaaagacttcaacttttaaacatccatacaaaatttcataaatc--acataatccatagattatgttttatgacgtgaatgaagtggaaacgataaa 221400  T
Q  501 cttaataagat 511  Q
    |||||||||||    
T  221399 cttaataagat 221389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 431 - 524
Target Start/End: Complemental strand, 46395072 - 46394976
Alignment:
Q  431 atccatagaaaattcatgattcttatataatcca---tatgttttatgatgtgaatgaagtggaaatggtgaacttaataagatttattaaagaaat 524  Q
    ||||||||||||||||||||| ||| ||||| ||   |||||||||||||||||||||| |||||| |||||||||||||||||  |||||| ||||    
T  46395072 atccatagaaaattcatgatttttacataattcaggatatgttttatgatgtgaatgaaatggaaacggtgaacttaataagatgaattaaaaaaat 46394976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 431 - 511
Target Start/End: Complemental strand, 1143375 - 1143290
Alignment:
Q  431 atccatagaaaattcatgattcttatataatcca-----tatgttttatgatgtgaatgaagtggaaatggtgaacttaataagat 511  Q
    ||||||||||||||||||||||||| ||||||||     ||||||||||||| |||||||||||||||   | |||||||||||||    
T  1143375 atccatagaaaattcatgattcttacataatccatatgatatgttttatgatatgaatgaagtggaaacattaaacttaataagat 1143290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 382 - 437
Target Start/End: Complemental strand, 1143465 - 1143410
Alignment:
Q  382 gtacaaataataactttttctaattaccaaaaaatttcaacttttagacatccata 437  Q
    ||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||    
T  1143465 gtacaaataataactttttttaattaccaaaaaacttcaatttttaaacatccata 1143410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 383 - 436
Target Start/End: Original strand, 18906331 - 18906384
Alignment:
Q  383 tacaaataataactttttctaattaccaaaaaatttcaacttttagacatccat 436  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||    
T  18906331 tacaaagaataactttttttaattaccaaaaaacttcaacttttaaacatccat 18906384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 468 - 511
Target Start/End: Complemental strand, 34442433 - 34442390
Alignment:
Q  468 gttttatgatgtgaatgaagtggaaatggtgaacttaataagat 511  Q
    ||||||||||||||||||||| |||| |||||||||||||||||    
T  34442433 gttttatgatgtgaatgaagttgaaacggtgaacttaataagat 34442390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 383 - 437
Target Start/End: Complemental strand, 46395161 - 46395107
Alignment:
Q  383 tacaaataataactttttctaattaccaaaaaatttcaacttttagacatccata 437  Q
    |||||||||||||||||| |||||||||||||  ||||||| ||| |||||||||    
T  46395161 tacaaataataactttttttaattaccaaaaatcttcaactattaaacatccata 46395107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 431 - 511
Target Start/End: Complemental strand, 52597105 - 52597016
Alignment:
Q  431 atccatagaaaattcatgattcttatataatcc---------atatgttttatgatgtgaatgaagtggaaatggtgaacttaataagat 511  Q
    ||||||||||||||||||||||||| |||||||         ||||||||| |||||| |||||||| ||||  ||||||||||||||||    
T  52597105 atccatagaaaattcatgattcttacataatccatatatatgatatgttttttgatgtaaatgaagtagaaacagtgaacttaataagat 52597016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 309 - 349
Target Start/End: Complemental strand, 52597258 - 52597218
Alignment:
Q  309 ccactatgcgggtacccgcgggtattgaggtatctatggat 349  Q
    ||||||||||||||||||||| |||||||||||| ||||||    
T  52597258 ccactatgcgggtacccgcggatattgaggtatccatggat 52597218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 307 - 357
Target Start/End: Complemental strand, 46395244 - 46395194
Alignment:
Q  307 acccactatgcgggtacccgcgggtattgaggtatctatggatattcatgg 357  Q
    |||||||||||| ||||||| ||||| ||||||||| |||| |||||||||    
T  46395244 acccactatgcgtgtacccgtgggtaatgaggtatccatgggtattcatgg 46395194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 46395314 - 46395270
Alignment:
Q  248 ataatatgatacccgtcaccgtcccattggataaatatgataccc 292  Q
    ||||||||||||||||| ||| ||| ||||||||| |||||||||    
T  46395314 ataatatgatacccgtccccgccccgttggataaagatgataccc 46395270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 5e-27; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 307 - 434
Target Start/End: Original strand, 16855532 - 16855659
Alignment:
Q  307 acccactatgcgggtacccgcgggtattgaggtatctatggatattcatggatttttaaatttgtttannnnnnngtacaaataataactttttctaatt 406  Q
    |||||||||||||||||||||||||||||||||||  |||| ||  ||||||||||| ||||| ||||       ||| ||||||||||||||| |||||    
T  16855532 acccactatgcgggtacccgcgggtattgaggtattcatgggtacccatggatttttgaatttatttattttttggtataaataataactttttttaatt 16855631  T
Q  407 accaaaaaatttcaacttttagacatcc 434  Q
    ||||||||| ||||||||||| ||||||    
T  16855632 accaaaaaacttcaacttttaaacatcc 16855659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 431 - 511
Target Start/End: Complemental strand, 15921486 - 15921401
Alignment:
Q  431 atccatagaaaattcatgattcttatataatccatatg-----ttttatgatgtgaatgaagtggaaatggtgaacttaataagat 511  Q
    ||||||||||||||||||||||||| ||||||||||||     |||| ||||||||||||||| |||| |||||||||||||||||    
T  15921486 atccatagaaaattcatgattcttacataatccatatgatatgttttttgatgtgaatgaagtagaaacggtgaacttaataagat 15921401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 431 - 511
Target Start/End: Original strand, 16855678 - 16855764
Alignment:
Q  431 atccatagaaaa-ttcatgattcttatataatccata-----tgttttatgatgtgaatgaagtggaaatggtgaacttaataagat 511  Q
    |||||||||||| ||||||||||||||||||||||||     ||||||||||||||||||||||| |||  ||||||||| ||||||    
T  16855678 atccatagaaaaattcatgattcttatataatccataggatatgttttatgatgtgaatgaagtgaaaacagtgaacttagtaagat 16855764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 431 - 511
Target Start/End: Complemental strand, 28247194 - 28247111
Alignment:
Q  431 atccatagaaaattcatgattcttatataatcca---tatgttttatgatgtgaatgaagtggaaatggtgaacttaataagat 511  Q
    ||||||||||||||||||||| ||| || ||  |   |||||||||||||||||||||||| |||| |||||||||||||||||    
T  28247194 atccatagaaaattcatgatttttacattatttagaatatgttttatgatgtgaatgaagtagaaacggtgaacttaataagat 28247111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 435 - 511
Target Start/End: Original strand, 32903656 - 32903737
Alignment:
Q  435 atagaaaattcatgattcttatataatcca-----tatgttttatgatgtgaatgaagtggaaatggtgaacttaataagat 511  Q
    ||||||||||||||||||||| ||||| ||     ||||||| ||||||||||||||||||||| ||| |||||||||||||    
T  32903656 atagaaaattcatgattcttacataatacataggttatgtttcatgatgtgaatgaagtggaaacggtaaacttaataagat 32903737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 309 - 524
Target Start/End: Complemental strand, 26503165 - 26502934
Alignment:
Q  309 ccactatgcgggtacccgcgggtattgaggtatctatggatattcatggatttttaaatttgtttannnnnnngtacaaataataac--tttttctaatt 406  Q
    ||||||||||||||||||||| |||||| ||||| |||| || ||||| |||||  ||||| ||||       |||| |||||||||  ||||| |||||    
T  26503165 ccactatgcgggtacccgcggatattgaagtatccatgggtactcatgaattttagaatttattta-tttttggtactaataataactttttttttaatt 26503067  T
Q  407 accaaaaaatttcaacttttagac-----------atccatagaaaattcatgattcttatata----atccatatgttttatgatgtgaatgaagtgga 491  Q
    ||| ||||| |||||||||||  |           ||||||||||||||||||||||||| |||    ||  ||||||||||||||||||||||| || |    
T  26503066 accgaaaaacttcaacttttaagcattcatacataatccatagaaaattcatgattcttacataactcatggatatgttttatgatgtgaatgaaatgaa 26502967  T
Q  492 aatggtgaacttaataagatttattaaagaaat 524  Q
    ||  ||||||||||||||||  |||||| ||||    
T  26502966 aacagtgaacttaataagatgaattaaaaaaat 26502934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 383 - 437
Target Start/End: Complemental strand, 15921576 - 15921522
Alignment:
Q  383 tacaaataataactttttctaattaccaaaaaatttcaacttttagacatccata 437  Q
    |||||||||||||||||| | |||||||||||| ||||| ||||| | |||||||    
T  15921576 tacaaataataactttttttgattaccaaaaaacttcaagttttaaatatccata 15921522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 28247366 - 28247320
Alignment:
Q  309 ccactatgcgggtacccgcgggtattgaggtatctatggatattcat 355  Q
    |||||||||||||| ||  |||||||||||||||||||| |||||||    
T  28247366 ccactatgcgggtatccatgggtattgaggtatctatgggtattcat 28247320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 434 - 524
Target Start/End: Complemental strand, 4334074 - 4333979
Alignment:
Q  434 catagaaaattcatgattcttatataatccata-----tgttttatgatgtgaatgaagtggaaatggtgaacttaataagatttattaaagaaat 524  Q
    |||||||||||||||||||||| ||||||||||     ||||||||||||||||||||||||||| | |||||||||||||||  |||||| ||||    
T  4334074 catagaaaattcatgattcttacataatccatagaatatgttttatgatgtgaatgaagtggaaacgatgaacttaataagatgaattaaaaaaat 4333979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 431 - 511
Target Start/End: Complemental strand, 32923330 - 32923246
Alignment:
Q  431 atccatagaaaattcatgattcttatataatccata-----tgttttatgatgtgaatgaagtggaaatggtgaacttaataagat 511  Q
    |||||||||||||| || ||||||| ||||||||||     ||||||||||||| |||||||||||||   |||||||||||||||    
T  32923330 atccatagaaaatt-attattcttacataatccataagatgtgttttatgatgtaaatgaagtggaaacaatgaacttaataagat 32923246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 310 - 437
Target Start/End: Complemental strand, 3858471 - 3858343
Alignment:
Q  310 cactatgcgggtacccgcgggtattgaggtatctatggatattcatggatttttaaatttgtttannnnnnng-tacaaataataactttttctaattac 408  Q
    ||||||| ||| ||||| ||||||||||||||| |||| ||  ||||||||||| ||||| ||||       | |||||||||||||||||| ||| |||    
T  3858471 cactatgtgggcacccgtgggtattgaggtatccatgggtacccatggatttttgaatttttttatttttttggtacaaataataactttttttaaatac 3858372  T
Q  409 caaaaaatttcaacttttagacatccata 437  Q
    ||||||||||||||||||| |||||||||    
T  3858371 caaaaaatttcaacttttaaacatccata 3858343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 434 - 525
Target Start/End: Original strand, 44791190 - 44791286
Alignment:
Q  434 catagaaaattcatgattcttatataatcc-----atatgttttatgatgtgaatgaagtggaaatggtgaacttaataagatttattaaagaaata 525  Q
    |||||||||||||||||||||| ||||| |     |||||||||||||||||||||||||| ||| ||| |||||||||||||  |||||| |||||    
T  44791190 catagaaaattcatgattcttacataatgcatatgatatgttttatgatgtgaatgaagtgaaaacggtaaacttaataagatgaattaaaaaaata 44791286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 431 - 511
Target Start/End: Complemental strand, 3858308 - 3858223
Alignment:
Q  431 atccatagaaaattcatgattcttatataatccatatg-----ttttatgatgtgaatgaagtggaaatggtgaacttaataagat 511  Q
    ||||||| ||||||||||||||||| ||||||||| ||     ||||||||||||||| |||| |||| |||||||||||||||||    
T  3858308 atccatataaaattcatgattcttacataatccatttgatatattttatgatgtgaataaagtagaaacggtgaacttaataagat 3858223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 431 - 511
Target Start/End: Original strand, 26041842 - 26041925
Alignment:
Q  431 atccatagaaaattcatgattcttatataatcca---tatgttttatgatgtgaatgaagtggaaatggtgaacttaataagat 511  Q
    ||||||||||||||||| || |||| | |||| |   ||||||||||||| ||||||||||||||| |||||||||||||||||    
T  26041842 atccatagaaaattcattatccttacacaatctaggatatgttttatgatatgaatgaagtggaaacggtgaacttaataagat 26041925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 435 - 511
Target Start/End: Complemental strand, 29808319 - 29808238
Alignment:
Q  435 atagaaaattcatgattcttatataatccata-----tgttttatgatgtgaatgaagtggaaatggtgaacttaataagat 511  Q
    ||||||||||||||||| ||| ||||||||||     ||||||||||||||||||||||| |||| | ||||||||||||||    
T  29808319 atagaaaattcatgatttttacataatccataggatatgttttatgatgtgaatgaagtgaaaattgcgaacttaataagat 29808238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 44791096 - 44791152
Alignment:
Q  382 gtacaaataataactttttct-aattaccaaaaaatttcaacttttagacatccata 437  Q
    ||||||||||||||||||| | ||||||||||| |||| |||||||| |||||||||    
T  44791096 gtacaaataataacttttttttaattaccaaaatattttaacttttaaacatccata 44791152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 44791009 - 44791067
Alignment:
Q  299 tcatggacacccactatgcgggtacccgcgggtattgaggtatctatggatattcatgg 357  Q
    |||||| |||||||||||| |||| ||| ||||||||||||||| |||| |||| ||||    
T  44791009 tcatgggcacccactatgcaggtatccgtgggtattgaggtatccatgggtatttatgg 44791067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 427
Target Start/End: Original strand, 26041759 - 26041800
Alignment:
Q  386 aaataataactttttctaattaccaaaaaatttcaactttta 427  Q
    ||||||||||||||| |||||| ||||||| |||||||||||    
T  26041759 aaataataactttttttaattatcaaaaaacttcaactttta 26041800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 7e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 435 - 524
Target Start/End: Original strand, 41137786 - 41137880
Alignment:
Q  435 atagaaaattcatgattcttatataatccata-----tgttttatgatgtgaatgaagtggaaatggtgaacttaataagatttattaaagaaat 524  Q
    ||||||||||||||||||||| ||||||||||     ||||||||||||||||||||||||||| |||||| ||||||||||  |||||| ||||    
T  41137786 atagaaaattcatgattcttacataatccataagatatgttttatgatgtgaatgaagtggaaacggtgaatttaataagatgaattaaaaaaat 41137880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 431 - 511
Target Start/End: Original strand, 6801259 - 6801344
Alignment:
Q  431 atccatagaaaattcatgattcttatataatccatatg-----ttttatgatgtgaatgaagtggaaatggtgaacttaataagat 511  Q
    ||||||||||||||||| ||||||| ||||||||||||     |||| | ||||||||||||| ||||  ||||||||||||||||    
T  6801259 atccatagaaaattcattattcttacataatccatatgatatgtttttttatgtgaatgaagtagaaactgtgaacttaataagat 6801344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 431 - 482
Target Start/End: Original strand, 33359232 - 33359288
Alignment:
Q  431 atccatagaaaattcatgattcttatataatcc-----atatgttttatgatgtgaa 482  Q
    ||||||||||||||||||||||||| |||||||     |||||||||||||||||||    
T  33359232 atccatagaaaattcatgattcttacataatccataggatatgttttatgatgtgaa 33359288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 447
Target Start/End: Original strand, 33359141 - 33359207
Alignment:
Q  382 gtacaaataataactttttct-aattaccaaaaaatttcaacttttagacatccatagaaaattcat 447  Q
    ||||||||||||||||||| | |||||  |||||| ||||||||||| ||||||||| | |||||||    
T  33359141 gtacaaataataacttttttttaattataaaaaaacttcaacttttaaacatccatacataattcat 33359207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 431 - 511
Target Start/End: Complemental strand, 778742 - 778657
Alignment:
Q  431 atccatagaaaattcatgattcttatataatccatatg-----ttttatgatgtgaatgaagtggaaatggtgaacttaataagat 511  Q
    ||||||||||||||||||||||||| ||||||||||||     |||||||||||||||||||| ||||  ||||||||||||||||    
T  778742 atccatagaaaattcatgattcttacataatccatatgatatgttttatgatgtgaatgaagtagaaacagtgaacttaataagat 778657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 302 - 447
Target Start/End: Complemental strand, 45885586 - 45885440
Alignment:
Q  302 tggacacccactatgcgggtacccgcgggtattgaggtatctatggatattcatggatttttaaatttgtttannnnnnngtacaaataataac-ttttt 400  Q
    |||| ||||||||||||| |||||||||||||||||||||  |||||||  ||||||||||| ||||| |||        ||||||| |||||| |||||    
T  45885586 tggatacccactatgcggatacccgcgggtattgaggtattcatggatacccatggatttttgaatttattttttctttggtacaaacaataactttttt 45885487  T
Q  401 ctaattaccaaaaaatttcaacttttagacatccatagaaaattcat 447  Q
     ||||||||||||||  | |||||||| ||||||||| | |||||||    
T  45885486 ttaattaccaaaaaaaattaacttttaaacatccatacataattcat 45885440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 431 - 511
Target Start/End: Original strand, 43127108 - 43127191
Alignment:
Q  431 atccatagaaaattcatgattcttatataatcca---tatgttttatgatgtgaatgaagtggaaatggtgaacttaataagat 511  Q
    ||||||||||||||||| ||||||| | ||||||   ||| ||||||| ||||||||||||||||| |||||||||||||||||    
T  43127108 atccatagaaaattcattattcttacacaatccaggatatcttttatggtgtgaatgaagtggaaacggtgaacttaataagat 43127191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 382 - 427
Target Start/End: Complemental strand, 38032446 - 38032401
Alignment:
Q  382 gtacaaataataactttttctaattaccaaaaaatttcaactttta 427  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||    
T  38032446 gtacaaataataactttttttaattaccaaaaaacttcaactttta 38032401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 302 - 359
Target Start/End: Complemental strand, 38032537 - 38032480
Alignment:
Q  302 tggacacccactatgcgggtacccgcgggtattgaggtatctatggatattcatggat 359  Q
    |||| ||||||||||| |||||||||||||||||||||||| |||| |||| ||||||    
T  38032537 tggatacccactatgcaggtacccgcgggtattgaggtatccatgggtattaatggat 38032480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 382 - 437
Target Start/End: Complemental strand, 778832 - 778777
Alignment:
Q  382 gtacaaataataactttttctaattaccaaaaaatttcaacttttagacatccata 437  Q
    ||||||||||||||||||| ||||||||| |||| ||||| ||||| |||||||||    
T  778832 gtacaaataataactttttttaattaccataaaacttcaaattttaaacatccata 778777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 437
Target Start/End: Complemental strand, 21859508 - 21859453
Alignment:
Q  382 gtacaaataataactttttctaattaccaaaaaatttcaacttttagacatccata 437  Q
    |||||||||| |||| ||| |||||||||||| | ||||||||||| |||||||||    
T  21859508 gtacaaataacaactctttttaattaccaaaagacttcaacttttaaacatccata 21859453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 434 - 511
Target Start/End: Complemental strand, 21859417 - 21859335
Alignment:
Q  434 catagaaaattcatgattcttatataatcc-----atatgttttatgatgtgaatgaagtggaaatggtgaacttaataagat 511  Q
    |||||||||||||||||||||| ||| |||     ||||||||||||| ||||||||||||  || | | |||||||||||||    
T  21859417 catagaaaattcatgattcttagatactccataagatatgttttatgacgtgaatgaagtgacaacgataaacttaataagat 21859335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 437
Target Start/End: Complemental strand, 2455925 - 2455884
Alignment:
Q  396 tttttctaattaccaaaaaatttcaacttttagacatccata 437  Q
    ||||| |||||||||||||| ||||||||||| |||||||||    
T  2455925 tttttttaattaccaaaaaacttcaacttttaaacatccata 2455884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 525
Target Start/End: Complemental strand, 38032283 - 38032230
Alignment:
Q  472 tatgatgtgaatgaagtggaaatggtgaacttaataagatttattaaagaaata 525  Q
    |||||| ||||||||||||||| | |||||||||||||||  |||||| |||||    
T  38032283 tatgatatgaatgaagtggaaacgatgaacttaataagatgaattaaaaaaata 38032230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 21237149 - 21237109
Alignment:
Q  252 tatgatacccgtcaccgtcccattggataaatatgataccc 292  Q
    |||||||||| || ||||||| |||||||||||||||||||    
T  21237149 tatgatacccatccccgtcccgttggataaatatgataccc 21237109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 431 - 511
Target Start/End: Complemental strand, 51004195 - 51004110
Alignment:
Q  431 atccatagaaaattcatgattcttatataatccatatg-----ttttatgatgtgaatgaagtggaaatggtgaacttaataagat 511  Q
    ||||||| ||||||||||||||||| |||||||||| |     ||||||||||||||||||||||||| |||||||||||||||||    
T  51004195 atccatataaaattcatgattcttacataatccataggatacgttttatgatgtgaatgaagtggaaacggtgaacttaataagat 51004110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 434 - 511
Target Start/End: Complemental strand, 16543933 - 16543851
Alignment:
Q  434 catagaaaattcatgattcttatataatccata-----tgttttatgatgtgaatgaagtggaaatggtgaacttaataagat 511  Q
    |||||||||||||||||||||| ||||||||||     ||||||||||| ||||||||||||||| ||| |||||||||||||    
T  16543933 catagaaaattcatgattcttacataatccataggatatgttttatgatttgaatgaagtggaaacggtaaacttaataagat 16543851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 464 - 511
Target Start/End: Complemental strand, 17145356 - 17145309
Alignment:
Q  464 atatgttttatgatgtgaatgaagtggaaatggtgaacttaataagat 511  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||    
T  17145356 atatgttttatgatgtgaatgaagtggaaaccgtgaacttaataagat 17145309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 431 - 524
Target Start/End: Complemental strand, 3303344 - 3303248
Alignment:
Q  431 atccatagaaaattcatgattcttatataatcca---tatgttttatgatgtgaatgaagtggaaatggtgaacttaataagatttattaaagaaat 524  Q
    ||||||||||||||||||||| ||| ||||| ||   ||||||||||||||||||| ||||||||| | |||||  ||||||||  |||||| ||||    
T  3303344 atccatagaaaattcatgatttttacataattcaggatatgttttatgatgtgaataaagtggaaacgatgaacaaaataagatgaattaaaaaaat 3303248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 382 - 437
Target Start/End: Complemental strand, 51004285 - 51004230
Alignment:
Q  382 gtacaaataataactttttctaattaccaaaaaatttcaacttttagacatccata 437  Q
    |||||||| |||||||||| |||||||||||||| ||||| ||||| |||||||||    
T  51004285 gtacaaattataactttttttaattaccaaaaaacttcaaattttaaacatccata 51004230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 307 - 421
Target Start/End: Complemental strand, 17145479 - 17145366
Alignment:
Q  307 acccactatgcgggtacccgcgggtattgaggtatctatggatattcatggatttttaaatttgtttannnnnnngtacaaataataactttttctaatt 406  Q
    |||||||||||||||||| | ||||||||| ||||| |||| ||  ||||||||||| ||||| ||||       || ||||| |||||||||| ||| |    
T  17145479 acccactatgcgggtacctgtgggtattgaagtatccatgggtacccatggatttttgaatttatttattttttggtgcaaatgataacttttt-taact 17145381  T
Q  407 accaaaaaatttcaa 421  Q
    ||||||||| |||||    
T  17145380 accaaaaaacttcaa 17145366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 390 - 447
Target Start/End: Complemental strand, 17586507 - 17586450
Alignment:
Q  390 aataactttttctaattaccaaaaaatttcaacttttagacatccatagaaaattcat 447  Q
    ||||||||||| |||||||||||||| ||||||||||| |||| |||| | |||||||    
T  17586507 aataactttttttaattaccaaaaaacttcaacttttaaacattcatatataattcat 17586450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 3303512 - 3303464
Alignment:
Q  309 ccactatgcgggtacccgcgggtattgaggtatctatggatattcatgg 357  Q
    |||||||||||||| ||| ||||||||||||||| |||| |||||||||    
T  3303512 ccactatgcgggtatccgtgggtattgaggtatccatgggtattcatgg 3303464  T

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