View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14963_high_2 (Length: 459)
Name: NF14963_high_2
Description: NF14963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14963_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 116 - 436
Target Start/End: Original strand, 3224945 - 3225265
Alignment:
| Q |
116 |
ttacttacatcattatgttttgtcatgtgacaatttgagattgtgataccagtagaaccttggataacatcaacaagactatcctcacattcagagagtg |
215 |
Q |
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| T |
3224945 |
ttacttacatcattatgttttgtcatgtgacaatttgagattgtgataccagtagaaccttggataatatcaacaagaccatcctcacattcagagagtg |
3225044 |
T |
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| Q |
216 |
aaagatgatcaatccaaatattggaagatccataaatagagatagcatcaccatcacttcttgttctttgtccagtatggtcaaaagaatccctaatcaa |
315 |
Q |
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| T |
3225045 |
aaagatgatcaatccaaatattggaagatccataaatagagatagcatcaccatcacttcttgttctttgtccagtatggtcaaaagaatccctaatcaa |
3225144 |
T |
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| Q |
316 |
accacctggtttagctttaatatcttgaatatgaagtccatgaataataacattattaacaaattgcattgtaattccagcaccatccctaatttgaaca |
415 |
Q |
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| T |
3225145 |
accacctggtttagctttaatattttgaatatgaagtccatgaatgataacattattaacaaattgcattgtaattccagcaccatccctaatttgaaca |
3225244 |
T |
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| Q |
416 |
ttagctccacgaccatcaatt |
436 |
Q |
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| T |
3225245 |
ttagctccacgaccatcaatt |
3225265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 3224815 - 3224900
Alignment:
| Q |
11 |
cagagacggacccagaaattttaagtaatgtaggccatgtatatacattttgcagaaattaaatatcatataaaatttcatttttt |
96 |
Q |
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| T |
3224815 |
cagagacggacccataaattttaagtaatgtaggccatgtatatacattttgcagaaattaaatatcatataaaatttcatttttt |
3224900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 117 - 429
Target Start/End: Complemental strand, 2045522 - 2045210
Alignment:
| Q |
117 |
tacttacatcattatgttttgtcatgtgacaatttgagattgtgataccagtagaaccttggataacatcaacaagactatcctcacattcagagagtga |
216 |
Q |
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|||||||||| |||||||| |||||||| ||||||||||| |||| ||||||| ||||| || ||||||||||||| |||||| || | ||| | || |
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| T |
2045522 |
tacttacatcgttatgtttggtcatgtggcaatttgagatggtgactgcagtagagccttgaatgacatcaacaagaccatcctcgcaattagataagga |
2045423 |
T |
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| Q |
217 |
aagatgatcaatccaaatattggaagatccataaatagagatagcatcaccatcacttcttgttctttgtccagtatggtcaaaagaatccctaatcaaa |
316 |
Q |
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| T |
2045422 |
aatatgatcaatccagatgtttgatgaaccaaagacagagatagcatcaccatcactccttgttcttactccgagatgatcgaaagagtctctaatcaaa |
2045323 |
T |
|
| Q |
317 |
ccacctggtttagctttaat-atcttgaatatgaagtccatgaataataacattattaacaaattgcattgtaattccagcaccatccctaatttgaaca |
415 |
Q |
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||||| ||||||||||| ||||| || |||| || ||||| || ||||| || || |||||||| |||||||||||||| ||||||||||| ||| |
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| T |
2045322 |
ccaccattcttagctttaatgttcttg-atgcgaagaccgtgaatgatgacattgttgacgaattgcatggtaattccagcaccttccctaatttgcaca |
2045224 |
T |
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| Q |
416 |
ttagctccacgacc |
429 |
Q |
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|| ||||||||||| |
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| T |
2045223 |
ttggctccacgacc |
2045210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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