View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14963_high_3 (Length: 418)

Name: NF14963_high_3
Description: NF14963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14963_high_3
NF14963_high_3
[»] chr5 (9 HSPs)
chr5 (28-399)||(35426020-35426391)
chr5 (17-399)||(35377061-35377443)
chr5 (28-399)||(35755451-35755820)
chr5 (34-398)||(35367473-35367822)
chr5 (139-398)||(35371109-35371368)
chr5 (28-398)||(35411267-35411639)
chr5 (256-398)||(35386621-35386763)
chr5 (279-398)||(35437702-35437821)
chr5 (33-114)||(23935842-23935923)
[»] chr7 (1 HSPs)
chr7 (93-398)||(29622507-29622812)
[»] chr1 (2 HSPs)
chr1 (94-358)||(10419840-10420104)
chr1 (42-398)||(10414902-10415258)
[»] chr8 (3 HSPs)
chr8 (133-385)||(15294352-15294604)
chr8 (133-385)||(15474721-15474973)
chr8 (210-353)||(13564902-13565045)
[»] chr3 (1 HSPs)
chr3 (37-398)||(1154283-1154644)
[»] chr2 (4 HSPs)
chr2 (317-398)||(30663604-30663685)
chr2 (317-398)||(30672284-30672365)
chr2 (133-178)||(30663797-30663842)
chr2 (133-178)||(30672477-30672522)


Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 28 - 399
Target Start/End: Complemental strand, 35426391 - 35426020
Alignment:
Q  28 acaccattattttcttatcaaagtagtaatagttcctagcacggtaatttctgtttaatttcaagcaacttaactataacatcttttgtgagcattctct 127  Q
    |||||||||||||||||||| |||||| |||| | |||| | |  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35426391 acaccattattttcttatcacagtagtgatagcttctaggatgacaatttccgtttaatttcaagcaacttaactataacatcttttgtgagcattctct 35426292  T
Q  128 gattaggaaattcttcagaacatgcaattcctattttagcaaacatcactagacactcctttatgttgttttccataacttgtgtttgatcttcagaaaa 227  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  35426291 gagtaggaaattcttcagaacatgcaattcctattttagcaaacatcactaaacactcctttatgttgttttccataacttgtgtttgatcttcagcaaa 35426192  T
Q  228 tgacataagcaagcatgaatccactacatcaagaattccttcaggaattctcatcttacagaatttgtgtaaacttaaattctcataaaacatgttatct 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35426191 tgacataagcaagcatgaatccactacatcaagaattccttcaggaattctcatcttacagaatttgtgtaaacttaaattctcataaaacatgttatct 35426092  T
Q  328 gttggtctctttccagtaagcatctctaacagaacaattccatagctatagatatctccctgtggtgatacc 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35426091 gttggtctctttccagtaagcatctctaacagaacaattccatagctatagatatctccctgtggtgatacc 35426020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 17 - 399
Target Start/End: Complemental strand, 35377443 - 35377061
Alignment:
Q  17 catcaaggtagacaccattattttcttatcaaagtagtaatagttcctagcacggtaatttctgtttaatttcaagcaacttaactataacatcttttgt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  35377443 catcaaggtagacaccattattttcttatcaaagtagtaatagttcctagcacggtaatttctgtttaatttcaagcaacttcactataatatcttttgt 35377344  T
Q  117 gagcattctctgattaggaaattcttcagaacatgcaattcctattttagcaaacatcactagacactcctttatgttgttttccataacttgtgtttga 216  Q
    ||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |  |||||| ||| | |||||||    
T  35377343 gagcattctctgagtagggaattcttcagaacatgcaattcctatattagcaaacatcactagacactcctttatgctactttccacaacctttgtttga 35377244  T
Q  217 tcttcagaaaatgacataagcaagcatgaatccactacatcaagaattccttcaggaattctcatcttacagaatttgtgtaaacttaaattctcataaa 316  Q
    ||||||  |||||||| ||||||||||| |||||||| ||||||||||||||| |||||| |||||||||| ||||||||||| |||| ||||||| |||    
T  35377243 tcttcaacaaatgacacaagcaagcatggatccactatatcaagaattccttctggaattttcatcttacaaaatttgtgtaagcttagattctcacaaa 35377144  T
Q  317 acatgttatctgttggtctctttccagtaagcatctctaacagaacaattccatagctatagatatctccctgtggtgatacc 399  Q
    | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35377143 agatgttatctgttggtctctttccagtaagcatctctaacagaagaattccatagctatagatatctccctgtggtgatacc 35377061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 28 - 399
Target Start/End: Complemental strand, 35755820 - 35755451
Alignment:
Q  28 acaccattattttcttatcaaagtagtaatagttcctagcacggtaatttctgtttaatttcaagcaacttaactataacatcttttgtgagcattctct 127  Q
    ||||| ||||||||||| || ||||||||| |||  ||| |  |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35755820 acaccgttattttcttaccacagtagtaatggtt--taggaaagtaacttctgtttaatttcaagcaacttaattataacatcttttgtgagcattctct 35755723  T
Q  128 gattaggaaattcttcagaacatgcaattcctattttagcaaacatcactagacactcctttatgttgttttccataacttgtgtttgatcttcagaaaa 227  Q
    || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||   ||    
T  35755722 gagtaggaaattcttcagaacatgcaactcctattttagcaaacatcactagacactcctttatgttgttttccacaactcgtgtctgatcttcaaccaa 35755623  T
Q  228 tgacataagcaagcatgaatccactacatcaagaattccttcaggaattctcatcttacagaatttgtgtaaacttaaattctcataaaacatgttatct 327  Q
    ||  |||||  | |  ||||| || || ||||||||| ||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||    
T  35755622 tggaataaggcaacgggaatctacaacctcaagaatttcttcaggaattctcatcttacagaatttgtgtagagttagattctcataaaacatgttatct 35755523  T
Q  328 gttggtctctttccagtaagcatctctaacagaacaattccatagctatagatatctccctgtggtgatacc 399  Q
    |||||||||||||| |||||||| || ||||| | ||| |||||||| || ||||||||||  |||||||||    
T  35755522 gttggtctctttccggtaagcatttccaacagcagaatcccatagctgtaaatatctccctccggtgatacc 35755451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 34 - 398
Target Start/End: Complemental strand, 35367822 - 35367473
Alignment:
Q  34 ttattttcttatcaaagtagtaatagttcctagcacggtaatttctgtttaatttcaagcaacttaactataacatcttttgtgagcattctctgattag 133  Q
    |||||||| | |||| |||||| |||| |||||||  | || ||||| |||||||| |||||||| ||| |||||| |||| | | |||||  ||| |||    
T  35367822 ttattttcatctcaaggtagtagtagtacctagcagagcaacttctgcttaatttccagcaacttcactgtaacattttttatcaacattcgatgagtag 35367723  T
Q  134 gaaattcttcagaacatgcaattcctattttagcaaacatcactagacactcctttatgttgttttccataacttgtgtttgatcttcagaaaatgacat 233  Q
    | |||||||| |||||||||| ||||||||||||||||||||||||||||||| | ||               | |||| ||||||| |  ||||| |||    
T  35367722 ggaattcttcggaacatgcaactcctattttagcaaacatcactagacactccatcat---------------tagtgtctgatctttaagaaatggcat 35367638  T
Q  234 aagcaagcatgaatccactacatcaagaattccttcaggaattctcatcttacagaatttgtgtaaacttaaattctcataaaacatgttatctgttggt 333  Q
    ||||||   |||||||||||  ||||||||| || | |||||| ||||||||||||||||||| |  || | ||||||  |||||||| |||||||||||    
T  35367637 aagcaaatgtgaatccactatctcaagaatttctacgggaattttcatcttacagaatttgtgaaggctaagattctcgcaaaacatgctatctgttggt 35367538  T
Q  334 ctctttccagtaagcatctctaacagaacaattccatagctatagatatctccctgtggtgatac 398  Q
    ||||||||||| |||||||||||||| | ||| ||| |||| || | |||||||||||| |||||    
T  35367537 ctctttccagtgagcatctctaacagtagaatcccaaagctgtaaacatctccctgtggagatac 35367473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 139 - 398
Target Start/End: Complemental strand, 35371368 - 35371109
Alignment:
Q  139 tcttcagaacatgcaattcctattttagcaaacatcactagacactcctttatgttgttttccataacttgtgtttgatcttcagaaaatgacataagca 238  Q
    |||||||||||||||| ||| |||  |||||||||||| | ||| | | | || |||||||||| ||    ||| | |||||||| |||||  | |||||    
T  35371368 tcttcagaacatgcaactccaattgcagcaaacatcaccaaacaattcctaatcttgttttccacaatccctgtatcatcttcagcaaatggtaaaagca 35371269  T
Q  239 agcatgaatccactacatcaagaattccttcaggaattctcatcttacagaatttgtgtaaacttaaattctcataaaacatgttatctgttggtctctt 338  Q
    |   |||||| ||||  ||||| |||||||| |||||| |||| || |||||||  || | ||||| | ||||| |||||||||||||||||||||||||    
T  35371268 aatgtgaatctactatctcaaggattccttctggaattttcattttgcagaattcatgcagacttagactctcagaaaacatgttatctgttggtctctt 35371169  T
Q  339 tccagtaagcatctctaacagaacaattccatagctatagatatctccctgtggtgatac 398  Q
    ||| || |||||||||||||||| ||| ||| |||||||||||||||| |||||||||||    
T  35371168 tccggtgagcatctctaacagaagaatcccaaagctatagatatctccatgtggtgatac 35371109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 28 - 398
Target Start/End: Complemental strand, 35411639 - 35411267
Alignment:
Q  28 acaccattattttcttatc--aaagtagtaatagttcctagcacggtaatttctgtttaatttcaagcaacttaactataacatcttttgtgagcattct 125  Q
    |||| ||||||||||||||  | ||||||||||| | |||||| || || |||| ||| ||||||||||||||||| |||||||||||| | | |||||     
T  35411639 acacaattattttcttatcgtacagtagtaatagcttctagcaaggcaacttcttttttatttcaagcaacttaacgataacatcttttatcaacattcg 35411540  T
Q  126 ctgattaggaaattcttcagaacatgcaattcctattttagcaaacatcactagacactcctttatgttgttttccataacttgtgtttgatcttcagaa 225  Q
     |||  |||||| || ||||| ||||||| ||| ||| ||||||||||||| | ||| | | | || |||||||||| ||    ||| | |||||||| |    
T  35411539 atgagcaggaaactcgtcagagcatgcaactccgattctagcaaacatcaccaaacaattcctaatcttgttttccacaatccctgtctcatcttcagca 35411440  T
Q  226 aatgacataagcaagcatgaatccactacatcaagaattccttcaggaattctcatcttacagaatttgtgtaaacttaaattctcataaaacatgttat 325  Q
    ||||  | ||||||   |||||| ||||  ||||| |||||||| | |||| |||| || |||||||  |||| ||||| | ||||| ||||  ||||||    
T  35411439 aatggtaaaagcaaatgtgaatctactatctcaaggattccttctgaaattttcattttgcagaattcatgtagacttagactctcagaaaagttgttat 35411340  T
Q  326 ctgttggtctctttccagtaagcatctctaacagaacaattccatagctatagatatctccctgtggtgatac 398  Q
     ||||||||||||| |||| | ||||||||  |||| ||| ||| |||| |||||||||||| ||||||||||    
T  35411339 ttgttggtctctttgcagtgaacatctctagtagaagaatcccaaagctgtagatatctccccgtggtgatac 35411267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 256 - 398
Target Start/End: Complemental strand, 35386763 - 35386621
Alignment:
Q  256 tcaagaattccttcaggaattctcatcttacagaatttgtgtaaacttaaattctcataaaacatgttatctgttggtctctttccagtaagcatctcta 355  Q
    ||||| ||| |||| |||||| | || || |||||||| || | ||||||  ||||| ||||  |||||| ||||||||||||||| || | ||||||||    
T  35386763 tcaaggattgcttctggaatttttattttgcagaatttatgcagacttaatctctcagaaaagttgttatttgttggtctctttccggtgaacatctcta 35386664  T
Q  356 acagaacaattccatagctatagatatctccctgtggtgatac 398  Q
      |||| ||| ||| |||| ||||||||||||| |||||||||    
T  35386663 gtagaagaatcccaaagctgtagatatctccctttggtgatac 35386621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 398
Target Start/End: Complemental strand, 35437821 - 35437702
Alignment:
Q  279 catcttacagaatttgtgtaaacttaaattctcataaaacatgttatctgttggtctctttccagtaagcatctctaacagaacaattccatagctatag 378  Q
    ||||||||| ||||||||||  |||| |   ||| |||||||||| ||||||||| | ||| | || | |||||| ||||  | |||||||||||| ||     
T  35437821 catcttacataatttgtgtaggcttagaccttcacaaaacatgttgtctgttggtttttttgctgttaacatctccaacaatagaattccatagctgtaa 35437722  T
Q  379 atatctccctgtggtgatac 398  Q
    |||||||| |||||||||||    
T  35437721 atatctccttgtggtgatac 35437702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 23935842 - 23935923
Alignment:
Q  33 attattttcttatcaaagtagtaatagttcctagcacggtaatttctgtttaatttcaagcaacttaactataacatctttt 114  Q
    ||||||||||||||| ||||| ||| |||||||||| || || ||   ||| ||||||  |||||||||| |||||||||||    
T  23935842 attattttcttatcacagtagcaattgttcctagcatggaaactttgattttatttcactcaacttaactgtaacatctttt 23935923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 93 - 398
Target Start/End: Original strand, 29622507 - 29622812
Alignment:
Q  93 caacttaactataacatcttttgtgagcattctctgattaggaaattcttcagaacatgcaattcctattttagcaaacatcactagacactcctttatg 192  Q
    |||||||||||||||||||||| | |||||||  |||  |||||| |||| ||||||||||| ||| ||| ||||||||||||| | ||| | | | ||     
T  29622507 caacttaactataacatcttttattagcattcgatgagcaggaaactcttgagaacatgcaactccaattctagcaaacatcaccaaacaattcctaatc 29622606  T
Q  193 ttgttttccataacttgtgtttgatcttcagaaaatgacataagcaagcatgaatccactacatcaagaattccttcaggaattctcatcttacagaatt 292  Q
    |||||||||| ||    |||  ||||||||| |||||  ||||| || |  ||||||||||  |||||||||||||| |||||  |||||||||||||||    
T  29622607 ttgttttccacaatccctgtccgatcttcagcaaatggtataagtaaacgggaatccactatctcaagaattccttctggaatcttcatcttacagaatt 29622706  T
Q  293 tgtgtaaacttaaattctcataaaacatgttatctgttggtctctttccagtaagcatctctaacagaacaattccatagctatagatatctccctgtgg 392  Q
    ||||||  |||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||| ||| ||| |||| |||||||||||||||||    
T  29622707 tgtgtaggcttaaattctcacaaaacatgttatctgctggtctctttccagtgagcatctctaacagaagaatgccaaagctgtagatatctccctgtgg 29622806  T
Q  393 tgatac 398  Q
    ||||||    
T  29622807 tgatac 29622812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 94 - 358
Target Start/End: Original strand, 10419840 - 10420104
Alignment:
Q  94 aacttaactataacatcttttgtgagcattctctgattaggaaattcttcagaacatgcaattcctattttagcaaacatcactagacactcctttatgt 193  Q
    ||||| |||||||||||||||||||||| ||  ||| |||  |||||||| |||||||||| |||||||| |||||||||||||||||||||||| ||||    
T  10419840 aacttcactataacatcttttgtgagcactcgatgagtagcgaattcttcggaacatgcaactcctatttcagcaaacatcactagacactccttaatgt 10419939  T
Q  194 tgttttccataacttgtgtttgatcttcagaaaatgacataagcaagcatgaatccactacatcaagaattccttcaggaattctcatcttacagaattt 293  Q
    | |||||| | | | |||| ||||||| || ||||| |||||||||   |||||||||||  ||||||||| || |||||||| ||||||||||||||||    
T  10419940 ttttttccgtcattagtgtctgatctttaggaaatggcataagcaaatgtgaatccactatctcaagaatttctacaggaattttcatcttacagaattt 10420039  T
Q  294 gtgtaaacttaaattctcataaaacatgttatctgttggtctctttccagtaagcatctctaaca 358  Q
    ||| |  || | |||||    |||||||||||||||||||||||||||||| |||||||||||||    
T  10420040 gtgaaggctaagattctggctaaacatgttatctgttggtctctttccagtgagcatctctaaca 10420104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 42 - 398
Target Start/End: Original strand, 10414902 - 10415258
Alignment:
Q  42 ttatcaaagtagtaatagttcctagcacggtaatttctgtttaatttcaagcaacttaactataacatcttttgtgagcattctctgattaggaaattct 141  Q
    |||||| ||||||||||| |||||||| |||||||||||||| |||||||| |||||| |||||||||||||| | | |||||  |||  ||||| ||||    
T  10414902 ttatcacagtagtaatagctcctagcaaggtaatttctgttttatttcaaggaacttatctataacatcttttatcaacattcgatgagaaggaacttct 10415001  T
Q  142 tcagaacatgcaattcctattttagcaaacatcactagacactcctttatgttgttttccataacttgtgtttgatcttcagaaaatgacataagcaagc 241  Q
    ||||||||||||| ||| |||  | |||||||||| | ||||| ||| || || ||||||| ||     || | | |||| | ||||| || ||| ||      
T  10415002 tcagaacatgcaactccgattgcaccaaacatcaccaaacacttcttaatcttattttccacaatccccgtctcaacttcggcaaatggcaaaagtaatt 10415101  T
Q  242 atgaatccactacatcaagaattccttcaggaattctcatcttacagaatttgtgtaaacttaaattctcataaaacatgttatctgttggtctctttcc 341  Q
     |||||| ||||  || || |||||||| |||||| |||| || |||||||  |||| ||||  | ||||| |||||||||||| |||||||||||||||    
T  10415102 gtgaatctactatctcgaggattccttctggaattttcattttgcagaattcatgtagactttgactctcagaaaacatgttatttgttggtctctttcc 10415201  T
Q  342 agtaagcatctctaacagaacaattccatagctatagatatctccctgtggtgatac 398  Q
    ||| |||||||||||||||| ||| ||| ||||||||||||||||||||||||||||    
T  10415202 agtgagcatctctaacagaagaatcccaaagctatagatatctccctgtggtgatac 10415258  T

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Target: chr8 (Bit Score: 89; Significance: 9e-43; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 133 - 385
Target Start/End: Complemental strand, 15294604 - 15294352
Alignment:
Q  133 ggaaattcttcagaacatgcaattcctattttagcaaacatcactagacactcctttatgttgttttccataacttgtgtttgatcttcagaaaatgaca 232  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||| || || |||||| ||| | ||| |||||||||   ||||  |    
T  15294604 ggaaattcatcagaacatgcaactcctattttagcaaacatcactagacattcctttttgctgctttccacaacctttgtctgatcttcaaccaatggaa 15294505  T
Q  233 taagcaagcatgaatccactacatcaagaattccttcaggaattctcatcttacagaatttgtgtaaacttaaattctcataaaacatgttatctgttgg 332  Q
    ||||| |    ||| ||||||  |||||||||||||| |||||| |||||||||| ||||| |||| ||||| ||||||| | |||||| ||| ||||||    
T  15294504 taagccaatgagaacccactatctcaagaattccttctggaattttcatcttacaaaatttctgtagacttagattctcacagaacatgctatttgttgg 15294405  T
Q  333 tctctttccagtaagcatctctaacagaacaattccatagctatagatatctc 385  Q
    ||||||||| || ||||| || ||||| | ||| |||||||| ||||||||||    
T  15294404 tctctttccggtgagcatttccaacagcagaatcccatagctgtagatatctc 15294352  T

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Target: chr8; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 133 - 385
Target Start/End: Complemental strand, 15474973 - 15474721
Alignment:
Q  133 ggaaattcttcagaacatgcaattcctattttagcaaacatcactagacactcctttatgttgttttccataacttgtgtttgatcttcagaaaatgaca 232  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||| || || |||||| ||| | ||| |||||||||   ||||  |    
T  15474973 ggaaattcatcagaacatgcaactcctattttagcaaacatcactagacattcctttttgctgctttccacaacctttgtctgatcttcaaccaatggaa 15474874  T
Q  233 taagcaagcatgaatccactacatcaagaattccttcaggaattctcatcttacagaatttgtgtaaacttaaattctcataaaacatgttatctgttgg 332  Q
    ||||| |    ||| ||||||  |||||||||||||| |||||| |||||||||| ||||| |||| ||||| ||||||| | |||||| ||| ||||||    
T  15474873 taagccaatgagaacccactatctcaagaattccttctggaattttcatcttacaaaatttctgtagacttagattctcacagaacatgctatttgttgg 15474774  T
Q  333 tctctttccagtaagcatctctaacagaacaattccatagctatagatatctc 385  Q
    ||||||||| || ||||| || ||||| | ||| |||||||| ||||||||||    
T  15474773 tctctttccggtgagcatttccaacagcagaatcccatagctgtagatatctc 15474721  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 353
Target Start/End: Complemental strand, 13565045 - 13564902
Alignment:
Q  210 tgtttgatcttcagaaaatgacataagcaagcatgaatccactacatcaagaattccttcaggaattctcatcttacagaatttgtgtaaacttaaattc 309  Q
    |||||||||||| | ||||| ||||||||| | |  ||||||||   |||| |||||||| |||||| ||||||||||| | ||||||| | ||| |       
T  13565045 tgtttgatcttccgtaaatggcataagcaaacgttgatccactatcgcaaggattccttctggaattttcatcttacagtaattgtgtagatttagaccg 13564946  T
Q  310 tcataaaacatgttatctgttggtctctttccagtaagcatctc 353  Q
    ||  |||||||| |||| |||||||||||||| || ||||||||    
T  13564945 tcggaaaacatgatatccgttggtctctttccggtgagcatctc 13564902  T

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Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 37 - 398
Target Start/End: Complemental strand, 1154644 - 1154283
Alignment:
Q  37 ttttcttatcaaagtagtaatagttcctagcacggtaatttctg-tttaatttcaagcaacttaactataacatcttttgtgagcattctctgattagga 135  Q
    ||||||||||| | ||| ||| |||||||||| || ||| | || ||| ||||||  ||||||||| ||||||| |||| | | |||||  |||  ||||    
T  1154644 ttttcttatcacaatagcaatggttcctagcatgg-aatctttgatttgatttcattcaacttaacaataacatgttttatcaacattcgatgagcagga 1154546  T
Q  136 aattcttcagaacatgcaattcctattttagcaaacatcactagacactcctttatgttgttttccataacttgtgtttgatcttcagaaaatgacataa 235  Q
    || ||||||| |||||||| ||| ||| ||||||||||||| | |||||  || || |||||||||| || || ||| ||||||||   ||| | |||||    
T  1154545 aactcttcagtacatgcaactccaattctagcaaacatcaccaaacactttttaatcttgttttccacaatttctgtctgatcttcgacaaacggcataa 1154446  T
Q  236 gcaagcatgaatccactacatcaagaattccttcaggaattctcatcttacagaatttgtgtaaacttaaattctcataaaacatgttatctgttggtct 335  Q
    |||| | |   || ||||  ||||| |||||||||| |||| |||| ||||| || | || ||  |||||||||||| |||| ||  |||  ||||||||    
T  1154445 gcaaacgttggtcgactatctcaaggattccttcagaaattttcattttacaaaactcgtataggcttaaattctcacaaaatatactattggttggtct 1154346  T
Q  336 ctttccagtaagcatctctaacagaacaattccatagctatagatatctccctgtggtgatac 398  Q
    |||||| || |||||||||||||||| ||| ||| |||| |||||||||||||||||||||||    
T  1154345 ctttccggtgagcatctctaacagaagaatcccaaagctgtagatatctccctgtggtgatac 1154283  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 317 - 398
Target Start/End: Complemental strand, 30663685 - 30663604
Alignment:
Q  317 acatgttatctgttggtctctttccagtaagcatctctaacagaacaattccatagctatagatatctccctgtggtgatac 398  Q
    ||||| ||| |||||||||||||||||| ||||| ||||| |||| |||||| ||||| |||||||| || || ||||||||    
T  30663685 acatgctatttgttggtctctttccagtgagcatttctaatagaagaattccgtagctgtagatatcaccatgaggtgatac 30663604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 317 - 398
Target Start/End: Complemental strand, 30672365 - 30672284
Alignment:
Q  317 acatgttatctgttggtctctttccagtaagcatctctaacagaacaattccatagctatagatatctccctgtggtgatac 398  Q
    ||||| ||| |||||||||||||||||| ||||| ||||| |||| |||||| ||||| |||||||| || || ||||||||    
T  30672365 acatgctatttgttggtctctttccagtgagcatttctaatagaagaattccgtagctgtagatatcaccatgaggtgatac 30672284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 30663842 - 30663797
Alignment:
Q  133 ggaaattcttcagaacatgcaattcctattttagcaaacatcacta 178  Q
    ||||| |||||||||||||||| ||| ||| |||||||||||||||    
T  30663842 ggaaactcttcagaacatgcaactccaattatagcaaacatcacta 30663797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 30672522 - 30672477
Alignment:
Q  133 ggaaattcttcagaacatgcaattcctattttagcaaacatcacta 178  Q
    ||||| |||||||||||||||| ||| ||| |||||||||||||||    
T  30672522 ggaaactcttcagaacatgcaactccaattatagcaaacatcacta 30672477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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