View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14963_low_10 (Length: 226)
Name: NF14963_low_10
Description: NF14963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14963_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 3 - 208
Target Start/End: Original strand, 7699566 - 7699771
Alignment:
| Q |
3 |
gtgttgttgtcccagtcgtcaagacggccgttagggccgccaaaatggtctctaattttgaggagggcggctttgtcgtcagcgttgcagaagaagtcat |
102 |
Q |
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| T |
7699566 |
gtgttgttgtcccagtcgtcgaggcggcctttgggaccaccgaaatggtctctgattttgaggagggcggctttgtcgtcggcgttgcagaagaagtcat |
7699665 |
T |
|
| Q |
103 |
cacttgcgtttgatttggagaagtagatggaagaaaggaagagaagtgttaagtgcagtaggagaaacatgtttggagtagtcttcatcttaattttgga |
202 |
Q |
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| T |
7699666 |
cacttgcgtttgatttggagaagtagatggaagaaaggaagagaagtgttaagtggagtaggagaaacatgtttggagaagtcttcatcttaattttgga |
7699765 |
T |
|
| Q |
203 |
gttttc |
208 |
Q |
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|||||| |
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| T |
7699766 |
gttttc |
7699771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 7713909 - 7714102
Alignment:
| Q |
1 |
cagtgttgttgtcccagtcgtcaagacggccgttagggccgccaaaatggtctctaattttgaggagggcggctttgtcgtcagcgttgcagaagaagtc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7713909 |
cagtgttgttgtcccagtcgtcaagacggccgttagggccgccaaaatggtctctgattttgaggagggcggctttgtcgtcggcgttgcagaagaagtc |
7714008 |
T |
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| Q |
101 |
atcacttgcgtttgatttggagaagtagatggaagaaaggaagagaagtgttaagtgcagtaggagaaacatgtttggagtagtcttcatctta |
194 |
Q |
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| T |
7714009 |
atcacttgcgtttgatttggagaagtagatggaagaaaggaagaagagtgttaggctgagtagcataaacatgtttggaggagtcttcatctta |
7714102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 8 - 207
Target Start/End: Original strand, 7739754 - 7739956
Alignment:
| Q |
8 |
gttgtcccagtcgtcaagacggccgttagggccgccaaaatggtctctaattttgaggagggcggctttgtcgtcagcgttgcagaagaagtca---tca |
104 |
Q |
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||||||||| ||| ||| |||||||| |||||||| ||||||||||| ||||||||||||| ||||||||| | ||||||||| |||| ||| ||| |
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| T |
7739754 |
gttgtcccaatcggaaaggcggccgttggggccgccgaaatggtctctgattttgaggagggtggctttgtcattggcgttgcaggagaactcaacatca |
7739853 |
T |
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| Q |
105 |
cttgcgtttgatttggagaagtagatggaagaaaggaagagaagtgttaagtgcagtaggagaaacatgtttggagtagtcttcatcttaattttggagt |
204 |
Q |
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|| |||||| |||||||||||||||||||||||||||| ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7739854 |
tcagcatttgatgtggagaagtagatggaagaaaggaagaggagtgtcaagtggagtaggagaaacttgtttggagtagtcttcatcttaattttggagt |
7739953 |
T |
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| Q |
205 |
ttt |
207 |
Q |
| |
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||| |
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| T |
7739954 |
ttt |
7739956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 200
Target Start/End: Original strand, 7731596 - 7731791
Alignment:
| Q |
8 |
gttgtcccagtcgtcaagacggccgttagggccgccaaaatggtctctaattttgaggagggcggctttgtcgtcagcgttgcagaagaagtca---tca |
104 |
Q |
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||||||||| ||| ||| |||||||| |||||||| ||||||||||| ||||||||||||| ||||||||| | ||||||||| |||| ||| ||| |
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| T |
7731596 |
gttgtcccaatcggaaaggcggccgttggggccgccgaaatggtctctgattttgaggagggtggctttgtcattggcgttgcaggagaactcaacatca |
7731695 |
T |
|
| Q |
105 |
cttgcgtttgatttggagaagtagatggaagaaaggaagagaagtgttaagtgcagtaggagaaacatgtttggagtagtcttcatcttaattttg |
200 |
Q |
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|| |||||| |||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7731696 |
tcagcatttgatgtggagaagtagatggaagaaaggaagaggagtgtcaagtggagtaggagaaacatgtttggagtagtcttcatcttaattttg |
7731791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 27 - 207
Target Start/End: Original strand, 7727455 - 7727638
Alignment:
| Q |
27 |
cggccgttagggccgccaaaatggtctctaattttgaggagggcggctttgtcgtcagcgttgcagaagaagtca---tcacttgcgtttgatttggaga |
123 |
Q |
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|||||||| |||||||| ||||||||||| ||||||||||| | ||||||||| | || |||||| |||| ||| ||| || |||||| |||||| |
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| T |
7727455 |
cggccgttggggccgccgaaatggtctctgattttgaggagagtggctttgtcattggcattgcaggagaactcaacatcatcagcatttgatgtggaga |
7727554 |
T |
|
| Q |
124 |
agtagatggaagaaaggaagagaagtgttaagtgcagtaggagaaacatgtttggagtagtcttcatcttaattttggagtttt |
207 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
7727555 |
agtagatggaagaaaggaagagaagtgttaagtggagtaggagaaacttgtttggaggagtcttcatcttaattttggagtttt |
7727638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 30 - 199
Target Start/End: Complemental strand, 12907863 - 12907694
Alignment:
| Q |
30 |
ccgttagggccgccaaaatggtctctaattttgaggagggcggctttgtcgtcagcgttgcagaagaagtcatcacttgcgtttgatttggagaagtaga |
129 |
Q |
| |
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|||||||||||||| ||||||||||| ||||||||||| || ||||| || | | || |||| | || || | ||||||||||| |||||||| | |
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| T |
12907863 |
ccgttagggccgccgaaatggtctcttattttgaggagagcagctttatcattggggtggcaggataaatcgtttgaagcgtttgatttagagaagtata |
12907764 |
T |
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| Q |
130 |
tggaagaaaggaagagaagtgttaagtgcagtaggagaaacatgtttggagtagtcttcatcttaatttt |
199 |
Q |
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|| |||| ||||||| |||||||| || ||||| ||||||||||| |||| |||||||||||||||||| |
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| T |
12907763 |
tgaaagagaggaagatgagtgttaactggagtagaagaaacatgttaggagaagtcttcatcttaatttt |
12907694 |
T |
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