View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14963_low_2 (Length: 526)

Name: NF14963_low_2
Description: NF14963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14963_low_2
NF14963_low_2
[»] chr3 (30 HSPs)
chr3 (355-516)||(25253122-25253283)
chr3 (152-309)||(25252920-25253077)
chr3 (117-250)||(32688570-32688703)
chr3 (148-269)||(39471056-39471177)
chr3 (139-211)||(20407785-20407857)
chr3 (117-246)||(5418054-5418183)
chr3 (133-262)||(33895943-33896072)
chr3 (155-246)||(30740781-30740872)
chr3 (143-250)||(39943728-39943835)
chr3 (143-249)||(7029172-7029277)
chr3 (143-280)||(12710097-12710234)
chr3 (143-279)||(38644192-38644327)
chr3 (151-290)||(19561363-19561502)
chr3 (117-197)||(27040593-27040673)
chr3 (151-199)||(39133823-39133871)
chr3 (155-276)||(7521710-7521831)
chr3 (152-279)||(7834103-7834232)
chr3 (152-201)||(9505886-9505935)
chr3 (132-269)||(40942921-40943057)
chr3 (117-250)||(52198787-52198920)
chr3 (151-235)||(15823191-15823275)
chr3 (155-254)||(20661724-20661823)
chr3 (143-206)||(52934263-52934326)
chr3 (117-235)||(46294248-46294366)
chr3 (132-181)||(54432944-54432993)
chr3 (189-269)||(54432868-54432948)
chr3 (153-196)||(30662813-30662856)
chr3 (158-201)||(51067744-51067787)
chr3 (153-199)||(33152105-33152151)
chr3 (143-181)||(41609351-41609389)
[»] chr1 (39 HSPs)
chr1 (1-175)||(48152517-48152691)
chr1 (148-250)||(37441809-37441911)
chr1 (117-250)||(36418531-36418664)
chr1 (158-280)||(24575352-24575474)
chr1 (117-250)||(32179344-32179477)
chr1 (117-246)||(29678104-29678233)
chr1 (139-279)||(7994779-7994918)
chr1 (117-248)||(7955660-7955791)
chr1 (143-254)||(31868926-31869037)
chr1 (151-254)||(44595869-44595971)
chr1 (152-269)||(15257823-15257940)
chr1 (151-246)||(43090032-43090127)
chr1 (148-246)||(13645716-13645814)
chr1 (117-279)||(14578998-14579160)
chr1 (152-249)||(3576984-3577081)
chr1 (143-192)||(47603463-47603512)
chr1 (143-198)||(28005772-28005827)
chr1 (117-199)||(7840751-7840832)
chr1 (153-227)||(38061638-38061712)
chr1 (117-267)||(48575715-48575865)
chr1 (153-280)||(5205075-5205203)
chr1 (117-279)||(46265575-46265735)
chr1 (143-197)||(35309045-35309099)
chr1 (117-235)||(45582110-45582228)
chr1 (117-250)||(42936506-42936641)
chr1 (152-243)||(21681625-21681716)
chr1 (151-254)||(36118270-36118372)
chr1 (189-250)||(24470522-24470583)
chr1 (189-250)||(38061586-38061647)
chr1 (157-201)||(30211813-30211857)
chr1 (143-199)||(45654414-45654470)
chr1 (143-206)||(15305919-15305982)
chr1 (151-274)||(47982706-47982828)
chr1 (143-181)||(24470579-24470617)
chr1 (151-185)||(40160347-40160381)
chr1 (153-199)||(50445529-50445575)
chr1 (120-245)||(7595734-7595859)
chr1 (139-279)||(15662323-15662463)
chr1 (151-211)||(18349817-18349877)
[»] chr6 (17 HSPs)
chr6 (355-516)||(12428285-12428446)
chr6 (151-309)||(12428088-12428246)
chr6 (139-250)||(10346245-10346356)
chr6 (119-235)||(33109845-33109961)
chr6 (143-250)||(7957091-7957198)
chr6 (143-250)||(18961882-18961989)
chr6 (143-269)||(13311385-13311511)
chr6 (148-246)||(22295398-22295496)
chr6 (117-199)||(6998587-6998669)
chr6 (120-246)||(7436714-7436839)
chr6 (117-250)||(472837-472970)
chr6 (152-289)||(3082288-3082425)
chr6 (151-268)||(25181143-25181260)
chr6 (127-206)||(11460800-11460879)
chr6 (152-199)||(4442042-4442089)
chr6 (151-197)||(8597452-8597498)
chr6 (151-235)||(9463707-9463790)
[»] scaffold0316 (1 HSPs)
scaffold0316 (117-269)||(18721-18873)
[»] chr7 (37 HSPs)
chr7 (117-269)||(36926420-36926572)
chr7 (150-250)||(37333741-37333842)
chr7 (117-280)||(17025963-17026127)
chr7 (155-269)||(22074610-22074724)
chr7 (143-269)||(42071557-42071683)
chr7 (143-250)||(26215754-26215861)
chr7 (143-249)||(5776562-5776668)
chr7 (138-276)||(18250616-18250754)
chr7 (143-250)||(3931344-3931452)
chr7 (143-250)||(43052319-43052426)
chr7 (117-250)||(666212-666345)
chr7 (117-250)||(7443840-7443973)
chr7 (117-250)||(7539647-7539780)
chr7 (132-246)||(45054819-45054933)
chr7 (155-279)||(10618070-10618194)
chr7 (150-279)||(222910-223039)
chr7 (117-269)||(49035042-49035194)
chr7 (150-269)||(8110803-8110922)
chr7 (151-249)||(36471849-36471946)
chr7 (152-277)||(33899574-33899699)
chr7 (151-248)||(41449192-41449289)
chr7 (138-279)||(8390105-8390246)
chr7 (151-248)||(23236780-23236877)
chr7 (153-254)||(35544161-35544261)
chr7 (151-280)||(18740825-18740954)
chr7 (117-181)||(5795559-5795623)
chr7 (155-235)||(39429503-39429583)
chr7 (132-199)||(20259977-20260044)
chr7 (117-181)||(388438-388502)
chr7 (152-188)||(11596485-11596521)
chr7 (117-181)||(45174648-45174712)
chr7 (143-181)||(15433666-15433704)
chr7 (151-181)||(26719199-26719229)
chr7 (143-181)||(28950359-28950397)
chr7 (189-250)||(388498-388559)
chr7 (151-188)||(33172195-33172232)
chr7 (151-279)||(48633289-48633417)
[»] chr4 (41 HSPs)
chr4 (143-250)||(49820415-49820522)
chr4 (117-248)||(53369073-53369204)
chr4 (143-269)||(9469464-9469590)
chr4 (148-249)||(48977046-48977147)
chr4 (117-250)||(50605466-50605599)
chr4 (117-250)||(19850143-19850276)
chr4 (117-250)||(21436318-21436451)
chr4 (117-235)||(52705604-52705722)
chr4 (132-269)||(51409091-51409228)
chr4 (151-269)||(28266721-28266839)
chr4 (151-278)||(44377650-44377777)
chr4 (143-274)||(43386571-43386702)
chr4 (117-195)||(7505435-7505513)
chr4 (117-235)||(51994094-51994212)
chr4 (152-263)||(52813045-52813156)
chr4 (117-199)||(79771-79853)
chr4 (117-234)||(25133944-25134061)
chr4 (143-241)||(46945180-46945278)
chr4 (143-244)||(1803204-1803305)
chr4 (151-196)||(16743169-16743214)
chr4 (129-198)||(22720767-22720836)
chr4 (143-199)||(4275589-4275645)
chr4 (158-250)||(24009426-24009518)
chr4 (117-197)||(40797165-40797245)
chr4 (117-193)||(52812978-52813054)
chr4 (143-250)||(22183800-22183907)
chr4 (143-250)||(50240890-50240997)
chr4 (151-244)||(50711443-50711536)
chr4 (151-279)||(54625745-54625870)
chr4 (117-181)||(44792846-44792910)
chr4 (132-207)||(5765250-5765325)
chr4 (132-207)||(5767494-5767569)
chr4 (177-250)||(36543365-36543438)
chr4 (129-198)||(38493652-38493721)
chr4 (143-178)||(45674341-45674376)
chr4 (151-248)||(48151735-48151832)
chr4 (162-207)||(5769795-5769840)
chr4 (143-188)||(11055891-11055936)
chr4 (117-181)||(12790211-12790275)
chr4 (152-196)||(35778525-35778569)
chr4 (117-181)||(55892736-55892800)
[»] chr5 (34 HSPs)
chr5 (151-289)||(10493419-10493557)
chr5 (117-250)||(18879631-18879764)
chr5 (153-250)||(39407028-39407125)
chr5 (153-250)||(39408766-39408863)
chr5 (153-250)||(26299493-26299590)
chr5 (117-234)||(34856957-34857074)
chr5 (143-254)||(1840969-1841080)
chr5 (153-250)||(34720059-34720156)
chr5 (148-246)||(32157385-32157483)
chr5 (117-234)||(3805385-3805502)
chr5 (153-250)||(27450986-27451083)
chr5 (117-277)||(19283554-19283713)
chr5 (153-247)||(26297952-26298046)
chr5 (117-246)||(26217434-26217563)
chr5 (117-250)||(27905491-27905624)
chr5 (138-246)||(4983965-4984073)
chr5 (132-247)||(19715799-19715913)
chr5 (143-254)||(27195460-27195571)
chr5 (132-194)||(14501398-14501460)
chr5 (153-250)||(34724035-34724132)
chr5 (143-247)||(43385835-43385940)
chr5 (151-254)||(28430594-28430698)
chr5 (160-246)||(41782748-41782834)
chr5 (117-250)||(1224575-1224708)
chr5 (117-246)||(11136663-11136792)
chr5 (117-249)||(5385086-5385218)
chr5 (153-277)||(40057779-40057904)
chr5 (144-250)||(15931975-15932081)
chr5 (160-269)||(28242439-28242548)
chr5 (143-181)||(29322100-29322138)
chr5 (129-250)||(2675325-2675445)
chr5 (129-250)||(20188373-20188494)
chr5 (151-196)||(8056945-8056990)
chr5 (190-250)||(38523253-38523313)
[»] chr2 (21 HSPs)
chr2 (117-250)||(20986075-20986208)
chr2 (143-250)||(36538114-36538221)
chr2 (117-246)||(2647600-2647729)
chr2 (143-248)||(12139403-12139508)
chr2 (148-250)||(41958589-41958691)
chr2 (143-250)||(27633179-27633286)
chr2 (117-279)||(44741263-44741425)
chr2 (156-248)||(3409847-3409939)
chr2 (155-242)||(29804312-29804399)
chr2 (151-206)||(40675210-40675265)
chr2 (155-277)||(40458381-40458503)
chr2 (143-260)||(39801158-39801275)
chr2 (117-249)||(26435778-26435910)
chr2 (129-199)||(18667148-18667218)
chr2 (117-250)||(11027298-11027431)
chr2 (117-181)||(33830901-33830965)
chr2 (117-181)||(33164617-33164681)
chr2 (153-208)||(29478090-29478145)
chr2 (148-187)||(35380396-35380435)
chr2 (207-268)||(20204366-20204427)
chr2 (189-249)||(33830961-33831021)
[»] chr8 (14 HSPs)
chr8 (148-246)||(43966924-43967022)
chr8 (117-248)||(9413262-9413393)
chr8 (143-250)||(11161115-11161222)
chr8 (129-250)||(22563281-22563402)
chr8 (140-199)||(17865721-17865780)
chr8 (152-199)||(22930896-22930943)
chr8 (117-235)||(32740290-32740408)
chr8 (151-200)||(25731900-25731949)
chr8 (152-269)||(12377767-12377884)
chr8 (132-248)||(39477444-39477559)
chr8 (151-196)||(13784250-13784295)
chr8 (141-247)||(32554092-32554198)
chr8 (1-49)||(10292291-10292339)
chr8 (151-211)||(15211940-15212000)
[»] scaffold0106 (1 HSPs)
scaffold0106 (120-211)||(26507-26598)
[»] scaffold0444 (1 HSPs)
scaffold0444 (151-278)||(1381-1508)
[»] scaffold0658 (1 HSPs)
scaffold0658 (143-199)||(6440-6496)
[»] scaffold0746 (1 HSPs)
scaffold0746 (151-197)||(5335-5381)
[»] scaffold0043 (1 HSPs)
scaffold0043 (117-247)||(16503-16632)
[»] scaffold0025 (1 HSPs)
scaffold0025 (173-206)||(4745-4778)


Alignment Details
Target: chr3 (Bit Score: 154; Significance: 2e-81; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 355 - 516
Target Start/End: Original strand, 25253122 - 25253283
Alignment:
Q  355 agaaagtatatattaaaatagattaaaagatctcaaacacaaatttgtgctgaatacaaaaataacaaattataatttgggtactaaaatataattattt 454  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25253122 agaaagtatatattaaaatagattaaaagatctctaacacaaatttgtgctgaatacaaaaataacaaattataattttggtactaaaatataattattt 25253221  T
Q  455 gacccagcgctgttaagttaaaatagcatggtactaaaatataatttaggtacaatgaagtt 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25253222 gacccagcgctgttaagttaaaatagcatggtactaaaatataatttaggtacaatgaagtt 25253283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 152 - 309
Target Start/End: Original strand, 25252920 - 25253077
Alignment:
Q  152 ctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacagc 251  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||| || ||||||||||||    
T  25252920 ctcgactcgataagaattggttcggctcaaaactcgactcgagttcaatacgaactttttgttaagctcgagttcggctcgtttaaagttcacgaacagc 25253019  T
Q  252 tcgactcgactcattagggtcaactcgtcagctcaaatcaaataattaaaatgccaac 309  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25253020 tcgactcgactcattaggttcaactcgtcagctcaaatcaaataattaaaatgccaac 25253077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 117 - 250
Target Start/End: Original strand, 32688570 - 32688703
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| ||||| ||||| ||| |||| ||||||||||||||||| |||||||||||||||||||||  |||||||| || ||||||| ||| || |    
T  32688570 atgagtcgagttgaaccgaatctgtctgagctcggctcgactcgataaaaattggttcggctcgaaactcagctcgagtttgacatgaactattttttca 32688669  T
Q  217 gttcgagttcggctcgtttcaaattcacgaacag 250  Q
    | ||||||||||||||||| || |||||||||||    
T  32688670 gctcgagttcggctcgtttaaagttcacgaacag 32688703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 148 - 269
Target Start/End: Complemental strand, 39471177 - 39471056
Alignment:
Q  148 tcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaa 247  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||| || || |||||||| |||||||| || ||||||||    
T  39471177 tcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactattttttcagctcgagttcagctcgtttaaagttcacgaa 39471078  T
Q  248 cagctcgactcgactcattagg 269  Q
    ||| |||| ||| ||| |||||    
T  39471077 cagttcgattcggctcgttagg 39471056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 20407857 - 20407785
Alignment:
Q  139 tgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaacttttt 211  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  20407857 tgtttgagctcggctcgactcgataagtattggttcggctcgaaactcgactcgagttcgatacgaacttttt 20407785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 117 - 246
Target Start/End: Original strand, 5418054 - 5418183
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | || ||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | | |||| |||| ||      
T  5418054 atgagtcgagtcgagtcgaacttgtctgagttcggcttgactcgataagaattggttcggctcgaaactcgactcgagttcaaaacgaacctttttttgg 5418153  T
Q  217 gttcgagttcggctcgtttcaaattcacga 246  Q
    | |||| ||| |||||||| || |||||||    
T  5418154 gctcgatttcagctcgtttaaagttcacga 5418183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 133 - 262
Target Start/End: Original strand, 33895943 - 33896072
Alignment:
Q  133 cgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcg 232  Q
    |||| |||| |||| ||| |||||||| ||||||| |||||| |||| ||||||||||||||||||| | |||| |||| || || |||| |||||||||    
T  33895943 cgaacttgtctgagctcgactcgactcaataagaaatggttcagctccaaactcgactcgagttcgacacgaaccttttttttagctcgaattcggctcg 33896042  T
Q  233 tttcaaattcacgaacagctcgactcgact 262  Q
    ||| || |||||||||||||||| ||||||    
T  33896043 tttaaagttcacgaacagctcgattcgact 33896072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 155 - 246
Target Start/End: Original strand, 30740781 - 30740872
Alignment:
Q  155 gactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacga 246  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||| | |||| |||| || || ||||||||||||||||| || |||||||    
T  30740781 gactcgataagaaatggtttggctcgaaactcgactcgagttcgacacgaaccttttttttagctcgagttcggctcgtttaaagttcacga 30740872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 39943835 - 39943728
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattc 242  Q
    |||| ||||||||||||||||||||||||||| |||||||||||| |||||||| || | ||||||||| || || | |||||||||| |||| || |||    
T  39943835 tgagctcggctcgactcgataagaattggttcagctcgaaactcggctcgagtttgacacgaacttttttttcagcttgagttcggcttgtttaaagttc 39943736  T
Q  243 acgaacag 250  Q
    ||| ||||    
T  39943735 acgtacag 39943728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 143 - 249
Target Start/End: Original strand, 7029172 - 7029277
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattc 242  Q
    |||||||| |||||||||||||||||| |||| |||||||||||| ||||||||||| | ||| ||||| |||||||  |||||||||||||| || ||     
T  7029172 tgagttcgactcgactcgataagaatttgttcagctcgaaactcggctcgagttcgacacgaa-ttttttttaagtttaagttcggctcgtttaaagttt 7029270  T
Q  243 acgaaca 249  Q
    |||||||    
T  7029271 acgaaca 7029277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 143 - 280
Target Start/End: Original strand, 12710097 - 12710234
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaac--tttttgttaagttcgagttcggctcgtttcaaat 240  Q
    |||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| || | ||||  ||||| |||| | |||||||||||||||| || |    
T  12710097 tgagctcgactcgactcgataagaattggt-cggctcgaaactcgactcgagtttgaaacgaaccttttttcttaact-cgagttcggctcgtttaaagt 12710194  T
Q  241 tcacgaacagctcgactcgactcattagggtcaactcgtc 280  Q
    || |||||| ||||  ||| ||| ||||| ||||||||||    
T  12710195 tcgcgaacaactcggttcggctcgttaggttcaactcgtc 12710234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 143 - 279
Target Start/End: Complemental strand, 38644327 - 38644192
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattc 242  Q
    |||| ||||||||||| |||||||||| ||||||||| ||||||||||||||||||| | ||||||||| || || |||| |||| || |||| || |||    
T  38644327 tgagctcggctcgactagataagaatttgttcggctcaaaactcgactcgagttcgacacgaacttttt-ttcagctcgaattcgacttgtttaaagttc 38644229  T
Q  243 acgaacagctcgactcgactcattagggtcaactcgt 279  Q
    ||||| || |||  ||||||| ||||| |||| ||||    
T  38644228 acgaatagttcggttcgactcgttaggttcaattcgt 38644192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 151 - 290
Target Start/End: Complemental strand, 19561502 - 19561363
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacag 250  Q
    ||||||||||||||||||| |||  | || |||||||| ||||||||||||  |||||||| ||||| | |||||||| |||||| || ||  |||||||    
T  19561502 gctcgactcgataagaattagtttagttcaaaactcgattcgagttcgatacaaacttttttttaagcttgagttcggttcgtttaaagttatcgaacag 19561403  T
Q  251 ctcgactcgactcattagggtcaactcgtcagctcaaatc 290  Q
    |||| |||||||| ||||| |||  ||||||  |||||||    
T  19561402 ctcggctcgactctttaggttcagttcgtcatttcaaatc 19561363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 27040673 - 27040593
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttc 197  Q
    ||||||||| | || ||||| ||||||||| ||  ||||||||| ||||| ||||||||||||||||||||||||||||||    
T  27040673 atgagtcgagtcgagtcgaacttgtttgagctcaactcgactcgttaagatttggttcggctcgaaactcgactcgagttc 27040593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 39133823 - 39133871
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagttcga 199  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39133823 gctcgactcgataagaattggttcggctcgaaactcggctcgagttcga 39133871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 155 - 276
Target Start/End: Complemental strand, 7521831 - 7521710
Alignment:
Q  155 gactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaa-ctttttgttaagttcgagttcggctcgtttcaaattcacgaacagctc 253  Q
    |||||||||| |||| ||||||||||||||||||||||||||||| | ||| |||||| ||||  || |||| | || |||| |||||||||||||||||    
T  7521831 gactcgataaaaattcgttcggctcgaaactcgactcgagttcgaaacgaatcttttttttaa-ctcaagtttgacttgtttaaaattcacgaacagctc 7521733  T
Q  254 gactcgactcattagggtcaact 276  Q
    |  | ||||| ||||| ||||||    
T  7521732 ggtttgactcgttaggttcaact 7521710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 152 - 279
Target Start/End: Original strand, 7834103 - 7834232
Alignment:
Q  152 ctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaac--tttttgttaagttcgagttcggctcgtttcaaattcacgaaca 249  Q
    ||||||||||||||||||||||| |||| |||||| | ||||||| || | ||||  ||||| || || |||||||| |||| ||| || ||||||||||    
T  7834103 ctcgactcgataagaattggttcagctcaaaactcaattcgagtttgaaacgaaccttttttttttagctcgagttcagctcatttaaagttcacgaaca 7834202  T
Q  250 gctcgactcgactcattagggtcaactcgt 279  Q
    | |||  || |||||||||| |||||||||    
T  7834203 gttcggttcaactcattaggttcaactcgt 7834232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 9505935 - 9505886
Alignment:
Q  152 ctcgactcgataagaattggttcggctcgaaactcgactcgagttcgata 201  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  9505935 ctcgactcgataagaattgattcggctcgaaactcaactcgagttcgata 9505886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 132 - 269
Target Start/End: Original strand, 40942921 - 40943057
Alignment:
Q  132 tcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctc 231  Q
    |||||| ||| |||| ||| ||| |||||||||||||||||||| ||||||||||| ||||||||| | | |||| |||| |  || |||||||||||||    
T  40942921 tcgaatctgtctgagctcgactcaactcgataagaattggttcgactcgaaactcggctcgagttcaaaacgaacctttt-tctagctcgagttcggctc 40943019  T
Q  232 gtttcaaattcacgaacagctcgactcgactcattagg 269  Q
     ||| || |||||||||  ||||  ||||||| |||||    
T  40943020 atttaaagttcacgaaccactcggttcgactcgttagg 40943057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 250
Target Start/End: Original strand, 52198787 - 52198920
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | ||| ||||  ||| |||| |||||||||||||||| ||||  | ||||||||||||||||||||||||||| | ||||| ||| || |    
T  52198787 atgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgatatgaatctgctcggctcgaaactcgactcgagttcgacacgaactcttttttca 52198886  T
Q  217 gttcgagttcggctcgtttcaaattcacgaacag 250  Q
    | |||| || | ||||||| || ||||| |||||    
T  52198887 gctcgaatttgactcgtttaaagttcacaaacag 52198920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 15823275 - 15823191
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgttt 235  Q
    ||||| |||||||| | || | ||||||||||||||||||||||||||| ||||||| ||| || || ||||||||| |||||||    
T  15823275 gctcggctcgataaaattttgctcggctcgaaactcgactcgagttcgacatgaactcttttttcagctcgagttcgactcgttt 15823191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 254
Target Start/End: Original strand, 20661724 - 20661823
Alignment:
Q  155 gactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacagctcg 254  Q
    |||||||||| ||||| ||| ||||||||||||||| ||||| ||||  ||| |||| | | |||||||||| |||||||| || |||||||||| ||||    
T  20661724 gactcgataaaaattgattcagctcgaaactcgacttgagtttgatacaaaccttttttaaggttcgagttcagctcgtttaaagttcacgaacaactcg 20661823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 52934263 - 52934326
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaac 206  Q
    |||| ||| |||||||||||||||||||  |||||||||||||||||| |||||||||| ||||    
T  52934263 tgagctcgactcgactcgataagaattgactcggctcgaaactcgacttgagttcgatacgaac 52934326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 117 - 235
Target Start/End: Complemental strand, 46294366 - 46294248
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | || ||||| | || |||| |||||||||| | |||||||||||||| | ||||||||||||||||| | || | ||||| ||| || |    
T  46294366 atgagtcgagtcgagtcgaactcgtctgagctcggctcgacgcaataagaattggttcagttcgaaactcgactcgagattgacacgaactcttttttta 46294267  T
Q  217 gttcgagttcggctcgttt 235  Q
    | |||||||| ||||||||    
T  46294266 gctcgagttcagctcgttt 46294248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 54432993 - 54432944
Alignment:
Q  132 tcgaatttgtttgagttcggctcgactcgataagaattggttcggctcga 181  Q
    |||||| ||| |||| ||| ||||||||||||||||||||||||||||||    
T  54432993 tcgaatatgtctgagctcgactcgactcgataagaattggttcggctcga 54432944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 269
Target Start/End: Complemental strand, 54432948 - 54432868
Alignment:
Q  189 ctcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacagctcgactcgactcattagg 269  Q
    ||||||||| | | |||| |||| || || ||||||||||||||||| ||||||||||||| ||||  ||||||| |||||    
T  54432948 ctcgagttcaaaacgaaccttttttttagctcgagttcggctcgtttaaaattcacgaacaactcggttcgactcgttagg 54432868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 196
Target Start/End: Complemental strand, 30662856 - 30662813
Alignment:
Q  153 tcgactcgataagaattggttcggctcgaaactcgactcgagtt 196  Q
    |||||||||||||||||| ||||| ||||||||| |||||||||    
T  30662856 tcgactcgataagaattgattcggttcgaaactcaactcgagtt 30662813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 201
Target Start/End: Original strand, 51067744 - 51067787
Alignment:
Q  158 tcgataagaattggttcggctcgaaactcgactcgagttcgata 201  Q
    |||||||||||| |||||||||||||||| |||||| |||||||    
T  51067744 tcgataagaattagttcggctcgaaactcaactcgacttcgata 51067787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 33152151 - 33152105
Alignment:
Q  153 tcgactcgataagaattggttcggctcgaaactcgactcgagttcga 199  Q
    ||||||||||  ||||| |||||||||||||||||||| ||||||||    
T  33152151 tcgactcgatgtgaatttgttcggctcgaaactcgacttgagttcga 33152105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 41609351 - 41609389
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcga 181  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  41609351 tgagctcggctcgactcgataagaattggttcgactcga 41609389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 2e-69; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 48152517 - 48152691
Alignment:
Q  1 tatgtaggagtttatggttttctttagtctggtactgttgtggaagatgnnnnnnnttggttcatggtgataaagagattctcatatttgttttgtatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  48152517 tatgtaggagtttatggttttctttagtctggtactgttgtggaagatgaaaaaaattggttcatggtgataaagagattctcatatttgttttgtatct 48152616  T
Q  101 atcataaattatagggatgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcg 175  Q
     ||||||||||||||| ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||    
T  48152617 ctcataaattatagggctgagtcgaattgaatcgaacttgtctgagttcggttcgactcgataagaattggttcg 48152691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 37441911 - 37441809
Alignment:
Q  148 tcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaa 247  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||| || || ||||||||||||||||| || ||||||||    
T  37441911 tcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactattttttcagctcgagttcggctcgtttaaagttcacgaa 37441812  T
Q  248 cag 250  Q
    |||    
T  37441811 cag 37441809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 117 - 250
Target Start/End: Original strand, 36418531 - 36418664
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | ||||||||| ||  |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||| | ||| || |    
T  36418531 atgagtcgagtcgaatcgaatctgcctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaattattttttca 36418630  T
Q  217 gttcgagttcggctcgtttcaaattcacgaacag 250  Q
    | |||||||||| |||||| || |||||||||||    
T  36418631 gctcgagttcggttcgtttaaagttcacgaacag 36418664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 158 - 280
Target Start/End: Original strand, 24575352 - 24575474
Alignment:
Q  158 tcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacagctcgact 257  Q
    ||||||||||||||||||||||||||||||||||||||| || | ||||||||| || |  ||||||||||||||||| || |||||||||| ||||  |    
T  24575352 tcgataagaattggttcggctcgaaactcgactcgagtttgaaacgaactttttttttaactcgagttcggctcgtttaaagttcacgaacaactcggtt 24575451  T
Q  258 cgactcattagggtcaactcgtc 280  Q
    || ||| ||||| ||||||||||    
T  24575452 cggctcgttaggttcaactcgtc 24575474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 117 - 250
Target Start/End: Original strand, 32179344 - 32179477
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | ||| |||| |||  |||| ||||||||| |||||||||||||||||||||||||||||| || ||||| || | ||||| ||| || |    
T  32179344 atgagtcgagtcgaaccgaacttgcctgagctcggctcgattcgataagaattggttcggctcgaaactcggcttgagtttgacacgaactattttttca 32179443  T
Q  217 gttcgagttcggctcgtttcaaattcacgaacag 250  Q
    | ||||||||||||||||| ||||||||||||||    
T  32179444 gctcgagttcggctcgtttaaaattcacgaacag 32179477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 117 - 246
Target Start/End: Complemental strand, 29678233 - 29678104
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | ||||||||  ||| |||| | | |||||||||||||||| ||||||||||||||||||||||| ||||||| | |||| |||| || |    
T  29678233 atgagtcgagtcgaatcgaacctgtctgagcttgactcgactcgataagaaatggttcggctcgaaactcgactcaagttcgaaacgaacctttttttca 29678134  T
Q  217 gttcgagttcggctcgtttcaaattcacga 246  Q
      ||||||||||||||||| || |||||||    
T  29678133 tctcgagttcggctcgtttaaagttcacga 29678104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 139 - 279
Target Start/End: Original strand, 7994779 - 7994918
Alignment:
Q  139 tgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaa 238  Q
    |||||||||||| ||| ||||||||||||||| ||| |||||||||||||||||||||||| | |||| |||| || ||  ||||||| |||||| | ||    
T  7994779 tgtttgagttcgactcaactcgataagaattgattcagctcgaaactcgactcgagttcgaaacgaacctttt-tttagcacgagttcagctcgtataaa 7994877  T
Q  239 attcacgaacagctcgactcgactcattagggtcaactcgt 279  Q
     || ||||| || |||| ||||||| ||||| |||||||||    
T  7994878 gtttacgaatagttcgattcgactcgttaggttcaactcgt 7994918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 117 - 248
Target Start/End: Original strand, 7955660 - 7955791
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | || |||||| ||| |||| ||| |||||||| |||||||||||||||||||||||||||  |||||||||| | |||  |||| |  |    
T  7955660 atgagtcgagtcgagtcgaatctgtctgagctcgactcgactcaataagaattggttcggctcgaaactcggttcgagttcgaaacgaatcttttttcta 7955759  T
Q  217 gttcgagttcggctcgtttcaaattcacgaac 248  Q
    | ||||||||||||||||| || |||||||||    
T  7955760 gctcgagttcggctcgtttaaagttcacgaac 7955791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 143 - 254
Target Start/End: Original strand, 31868926 - 31869037
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattc 242  Q
    |||| |||||||||||| ||||||||||  |||||||||||||||||||||||||||||  |||  ||| ||||  ||| ||||||||||||| || |||    
T  31868926 tgagctcggctcgactcaataagaattgactcggctcgaaactcgactcgagttcgatacaaaccattttttaaactcgggttcggctcgtttaaagttc 31869025  T
Q  243 acgaacagctcg 254  Q
    ||||||| ||||    
T  31869026 acgaacatctcg 31869037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 44595869 - 44595971
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacag 250  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||  ||| |||| ||  |||||||||||||| || ||||||||||     
T  44595869 gctcgactcgataagaattggttcggttcgaaactcgacttgagttcgatacgaacccttttttaactt-aagttcggctcgtttaaagttcacgaacaa 44595967  T
Q  251 ctcg 254  Q
    ||||    
T  44595968 ctcg 44595971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 152 - 269
Target Start/End: Complemental strand, 15257940 - 15257823
Alignment:
Q  152 ctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacagc 251  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||| | ||||  ||| |  || ||||||||||||||||| || |||||||||  |    
T  15257940 ctcgactcgataagaattggttcggctcgaaactcggttcgagttcgaaacgaaccatttttctagctcgagttcggctcgtttaaagttcacgaaccac 15257841  T
Q  252 tcgactcgactcattagg 269  Q
    |||  ||||||| |||||    
T  15257840 tcggttcgactcgttagg 15257823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 151 - 246
Target Start/End: Complemental strand, 43090127 - 43090032
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacga 246  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| | | |||| |||| ||  | ||||||||||||||||| || |||||||    
T  43090127 gctcggctcgacaagaattggttcggctcgaaactcgactcgagttcaaaacgaacatttttttgggctcgagttcggctcgtttaaagttcacga 43090032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 148 - 246
Target Start/End: Complemental strand, 13645814 - 13645716
Alignment:
Q  148 tcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacga 246  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| || |  |||||||| |   | ||||||||| ||| ||| ||||||||||    
T  13645814 tcggctcgactcgattagaattggttcggctcgaaactcgactcgagtttgaaacaaactttttttccggctcgagttcgactcatttaaaattcacga 13645716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 279
Target Start/End: Complemental strand, 14579160 - 14578998
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | ||||||||  ||| |||| ||| ||||||||| |||||||||| |  | || || ||||  ||||||| || | ||||||||| || |    
T  14579160 atgagtcgagtcgaatcgaacctgtatgagctcgactcgactcgttaagaattggctttgttcaaacctcggttcgagtttgacacgaacttttttttga 14579061  T
Q  217 gttcgagttcggctcgtttcaaattcacgaacagctcgactcgactcattagggtcaactcgt 279  Q
    |||| |||||||||||||| |||||||||||||| | |  ||||||||||||| |||| ||||    
T  14579060 gttcaagttcggctcgtttaaaattcacgaacagtttggttcgactcattaggttcaattcgt 14578998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 152 - 249
Target Start/End: Original strand, 3576984 - 3577081
Alignment:
Q  152 ctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaaca 249  Q
    ||||||| ||||||||||||||| ||||||||||||| | ||||||||||  ||| |||| || |  ||||||||||||||||| || ||||||||||    
T  3576984 ctcgacttgataagaattggttcagctcgaaactcgatttgagttcgatacaaacattttatttaactcgagttcggctcgtttaaagttcacgaaca 3577081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 47603512 - 47603463
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcg 192  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  47603512 tgagttcggctcaactcgataagaattggttcggctcgaaactcgactcg 47603463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 28005772 - 28005827
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcg 198  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  28005772 tgagctcgactcgactcgataagaattggttcggctcgaaactcgactcaagttcg 28005827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 7840751 - 7840832
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcga 199  Q
    ||||||||| |||||||||||| || |||  | | ||||||||| |||||||||||||||||||||| |||||||||||||||    
T  7840751 atgagtcgagttgaatcgaattcgtctgaacttgactcgactcgttaagaattggttcggctcgaaa-tcgactcgagttcga 7840832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 38061712 - 38061638
Alignment:
Q  153 tcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcg 227  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||   |||| |||| ||||| |||||||||    
T  38061712 tcgactcgataagaattggttcggctcaaaattcgactcgagttcgaagcgaacctttttttaagctcgagttcg 38061638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 117 - 267
Target Start/End: Complemental strand, 48575865 - 48575715
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||||| ||||||||  ||| |||| ||| ||||||||||||||||||  || | ||||||||||||||| ||||| | | ||||| ||| || |    
T  48575865 atgagtcgaatcgaatcgaacatgtctgagctcgactcgactcgataagaatttatttgactcgaaactcgactcaagttcaacacgaactcttttttca 48575766  T
Q  217 gttcgagttcggctcgtttcaaattcacgaacagctcgactcgactcatta 267  Q
    | ||||||||  ||||||| || |||| |||||  | || |||||||||||    
T  48575765 gctcgagttcaactcgtttaaagttcatgaacaatttgattcgactcatta 48575715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 153 - 280
Target Start/End: Complemental strand, 5205203 - 5205075
Alignment:
Q  153 tcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaa-ctttttgttaagttcgagttcggctcgtttcaaattcacgaacagc 251  Q
    ||||||| |||||||||||||||||||||||||||||||||||| || | ||| |||||| || |  || |||||| ||| ||| || ||| |||||| |    
T  5205203 tcgactccataagaattggttcggctcgaaactcgactcgagtttgaaacgaacctttttttttacctcaagttcgactcatttaaagttcgcgaacaac 5205104  T
Q  252 tcgactcgactcattagggtcaactcgtc 280  Q
    |||  ||| ||| ||||| ||||||||||    
T  5205103 tcggttcggctcgttaggttcaactcgtc 5205075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 279
Target Start/End: Complemental strand, 46265735 - 46265575
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| ||||||||||  ||||| || ||  || |||||| |||||||| |||||| ||||| ||||| ||||||| || | || |||||| |  |    
T  46265735 atgagtcgagttgaatcgaacctgtttaagctcaacttgactcgttaagaattagttcggttcgaacctcgattcgagtttgacacgagcttttttt--a 46265638  T
Q  217 gttcgagttcggctcgtttcaaattcacgaacagctcgactcgactcattagggtcaactcgt 279  Q
    |||| |||||||||||||| || ||||||||||| | |  ||| ||||||||| |||| ||||    
T  46265637 gttcaagttcggctcgtttaaagttcacgaacagtttggttcggctcattaggttcaattcgt 46265575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 35309045 - 35309099
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttc 197  Q
    |||| |||| |||||||||||||||||||||||||||||||||||  ||||||||    
T  35309045 tgagctcggttcgactcgataagaattggttcggctcgaaactcggttcgagttc 35309099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 117 - 235
Target Start/End: Complemental strand, 45582228 - 45582110
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | || |||||| ||| |||| ||| |||||||||||||| ||| |||| ||||||||||||  | |||||||| | | ||||||| || |    
T  45582228 atgagtcgagtcgagtcgaatctgtatgagctcgactcgactcgataaggattagttcagctcgaaactcggtttgagttcgacacggacttttttttca 45582129  T
Q  217 gttcgagttcggctcgttt 235  Q
    | |||||||||| ||||||    
T  45582128 gctcgagttcggttcgttt 45582110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 250
Target Start/End: Original strand, 42936506 - 42936641
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgtt-- 214  Q
    ||||||||| | |||||||| |||| |||||||  ||||||||| |||||||||| |||  ||||| |||   ||||||| |  |  |||||||| ||      
T  42936506 atgagtcgagtcgaatcgaacttgtctgagttcaactcgactcgttaagaattggctcgattcgaacctcagttcgagtttgtcacaaactttttttttt 42936605  T
Q  215 aagttcgagttcggctcgtttcaaattcacgaacag 250  Q
    ||||||||||||||||||||| || |||||||||||    
T  42936606 aagttcgagttcggctcgtttaaagttcacgaacag 42936641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 152 - 243
Target Start/End: Complemental strand, 21681716 - 21681625
Alignment:
Q  152 ctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattca 243  Q
    ||||||||||||||||||||||| |||  ||||||| ||||||||||| | ||||| ||| || || ||| ||||  ||||||| |||||||    
T  21681716 ctcgactcgataagaattggttcagcttaaaactcggctcgagttcgacacgaactattttttcagctcgggttcaactcgtttaaaattca 21681625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 36118270 - 36118372
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacag 250  Q
    |||||||||||||||||||| ||| |||| |||||| |||| |||||||||  ||| |||| || || ||||||||| |||||||  | ||||||||||     
T  36118270 gctcgactcgataagaattgattcagctcaaaactcaactcaagttcgatacaaacatttt-tttagctcgagttcgactcgtttgtagttcacgaacaa 36118368  T
Q  251 ctcg 254  Q
    ||||    
T  36118369 ctcg 36118372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 24470583 - 24470522
Alignment:
Q  189 ctcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacag 250  Q
    ||||||||||||| ||||| ||| || || ||||||||||||||||| || |||||||||||    
T  24470583 ctcgagttcgatacgaactattttttcagctcgagttcggctcgtttaaagttcacgaacag 24470522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 38061647 - 38061586
Alignment:
Q  189 ctcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacag 250  Q
    ||||||||||| | ||||  ||| ||||| ||||||||||||||||| ||||||||||||||    
T  38061647 ctcgagttcgaaacgaaccattttttaagctcgagttcggctcgtttaaaattcacgaacag 38061586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 30211813 - 30211857
Alignment:
Q  157 ctcgataagaattggttcggctcgaaactcgactcgagttcgata 201  Q
    |||||||| |||| |||||||||||||||| ||||||||||||||    
T  30211813 ctcgataaaaattagttcggctcgaaactcaactcgagttcgata 30211857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 45654470 - 45654414
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcga 199  Q
    |||| ||| ||||||||||||||||||||||| ||| |||| ||| |||||||||||    
T  45654470 tgagctcgactcgactcgataagaattggttcagcttgaaattcggctcgagttcga 45654414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 15305919 - 15305982
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaac 206  Q
    |||| ||| |||||||| ||||||||||  ||||||| |||||||||||||||| |||| ||||    
T  15305919 tgagctcgactcgactcaataagaattgactcggctcaaaactcgactcgagtttgatacgaac 15305982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 274
Target Start/End: Original strand, 47982706 - 47982828
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacag 250  Q
    ||||||||| | |||||| ||||||| |||||||||||||||||||| | | |||| |||| ||||  ||||||| |  |||||| || ||||| ||||     
T  47982706 gctcgactcaacaagaatcggttcggttcgaaactcgactcgagttcaaaacgaacatttttttaa-ctcgagtttgattcgtttaaagttcacaaacaa 47982804  T
Q  251 ctcgactcgactcattagggtcaa 274  Q
    ||||  ||||||| ||||| ||||    
T  47982805 ctcggttcgactcgttaggatcaa 47982828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 143 - 181
Target Start/End: Complemental strand, 24470617 - 24470579
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcga 181  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  24470617 tgagctcggctcaactcgataagaattggttcggctcga 24470579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 40160381 - 40160347
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaact 185  Q
    ||||||||||||||||||||||||| |||||||||    
T  40160381 gctcgactcgataagaattggttcgactcgaaact 40160347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 50445529 - 50445575
Alignment:
Q  153 tcgactcgataagaattggttcggctcgaaactcgactcgagttcga 199  Q
    |||||||| ||||||||| ||| |||||||||||||||| |||||||    
T  50445529 tcgactcgttaagaattgattcagctcgaaactcgactctagttcga 50445575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 245
Target Start/End: Original strand, 7595734 - 7595859
Alignment:
Q  120 agtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagtt 219  Q
    |||| ||| ||||||||| ||| |||| ||  ||||||||| |||||||| | |||| ||||| ||||  ||||||| || | || |||||| || || |    
T  7595734 agtcaaatcgaatcgaatctgtctgagctcaactcgactcgttaagaattagctcggttcgaacctcggttcgagtttgacacgagcttttttttcagct 7595833  T
Q  220 cgagttcggctcgtttcaaattcacg 245  Q
    | |||||||||||||| || ||||||    
T  7595834 caagttcggctcgtttaaagttcacg 7595859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 279
Target Start/End: Original strand, 15662323 - 15662463
Alignment:
Q  139 tgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaa 238  Q
    |||||||| ||| ||| ||||| |||||||||| |||  ||||  ||||  |||| || || | ||||||||| || || ||  ||||||||||||| ||    
T  15662323 tgtttgagctcgactcaactcgttaagaattggctcgattcgagtctcggttcgaatttgacacgaacttttttttcagctcatgttcggctcgtttaaa 15662422  T
Q  239 attcacgaacagctcgactcgactcattagggtcaactcgt 279  Q
     ||||||||||| | |  ||||||||||||| |||| ||||    
T  15662423 gttcacgaacagtttggttcgactcattaggttcaattcgt 15662463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 18349877 - 18349817
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaacttttt 211  Q
    ||||| ||||||||||||| | |  |||| |||||||||||||||||||||  ||||||||    
T  18349877 gctcggctcgataagaatttgataagctcaaaactcgactcgagttcgatacaaacttttt 18349817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 130; Significance: 4e-67; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 355 - 516
Target Start/End: Original strand, 12428285 - 12428446
Alignment:
Q  355 agaaagtatatattaaaatagattaaaagatctcaaacacaaatttgtgctgaatacaaaaataacaaattataatttgggtactaaaatataattattt 454  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||    
T  12428285 agaaagtatatattaaaatagattaagagatctcaagcacaaatttgtgctgattacaaaaataacaaattataatatgggtactaaaatatatttattt 12428384  T
Q  455 gacccagcgctgttaagttaaaatagcatggtactaaaatataatttaggtacaatgaagtt 516  Q
     ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12428385 aacccaacgctcttaagttaaaatagcatggtactaaaatataatttaggtacaatgaagtt 12428446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 151 - 309
Target Start/End: Original strand, 12428088 - 12428246
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacag 250  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||| || || ||||||||    
T  12428088 gctcgactcgataagaattgattcggctcgaaactcgactcgagttcgatacgaactttttgttaagctcgagttcgactcgtttaaagtttacgaacag 12428187  T
Q  251 ctcgactcgactcattagggtcaactcgtcagctcaaatcaaataattaaaatgccaac 309  Q
     |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  12428188 ttcgactcgactcattaggttcaacttgtcagctcaaatcaaataattaaaatgccaac 12428246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 139 - 250
Target Start/End: Original strand, 10346245 - 10346356
Alignment:
Q  139 tgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaa 238  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||| | ||||| ||| || || ||||||||||||||||| ||    
T  10346245 tgtttgagctcggctcgattcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactattttttcagctcgagttcggctcgtttaaa 10346344  T
Q  239 attcacgaacag 250  Q
     |||||||||||    
T  10346345 gttcacgaacag 10346356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 119 - 235
Target Start/End: Original strand, 33109845 - 33109961
Alignment:
Q  119 gagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagt 218  Q
    ||||||| | || ||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| | | |||| |||| ||  |     
T  33109845 gagtcgagtcgagtcgaacttgtctgagctcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcaaaacgaacctttttttgggc 33109944  T
Q  219 tcgagttcggctcgttt 235  Q
    |||||||||||||||||    
T  33109945 tcgagttcggctcgttt 33109961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 7957091 - 7957198
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattc 242  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||| | | ||||| ||| || || |||||||| |||||||| || |||    
T  7957091 tgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcaacacgaactattttttcagctcgagttcagctcgtttaaagttc 7957190  T
Q  243 acgaacag 250  Q
    ||||||||    
T  7957191 acgaacag 7957198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 18961882 - 18961989
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattc 242  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |  |||| ||| || ||  |||||||| ||||||| || |||    
T  18961882 tgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacaaactattttttcagcccgagttcgactcgtttaaagttc 18961981  T
Q  243 acgaacag 250  Q
    ||||||||    
T  18961982 acgaacag 18961989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 143 - 269
Target Start/End: Original strand, 13311385 - 13311511
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattc 242  Q
    |||| ||| |||||||||||||||||||||||| ||| |||||||  |||||||||| | |||| |||| |  || ||||||||||||||||| || |||    
T  13311385 tgagctcgactcgactcgataagaattggttcgactcaaaactcggttcgagttcgaaacgaaccttttttctagctcgagttcggctcgtttaaagttc 13311484  T
Q  243 acgaacagctcgactcgactcattagg 269  Q
    ||||||  ||||| ||||||| |||||    
T  13311485 acgaaccactcgattcgactcgttagg 13311511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 148 - 246
Target Start/End: Original strand, 22295398 - 22295496
Alignment:
Q  148 tcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacga 246  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||||| |  |||||||| |   | ||||||||||||| ||| ||||||||||    
T  22295398 tcggctcaactcgattagaattggttcggctcgaaactcgactcgagttcgaaacaaactttttttccggctcgagttcggctcatttaaaattcacga 22295496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 6998587 - 6998669
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcga 199  Q
    ||||||||| | ||| ||||  ||| |||| |||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  6998587 atgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaatttgctcggctcgaaactcgactcgagttcga 6998669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 120 - 246
Target Start/End: Original strand, 7436714 - 7436839
Alignment:
Q  120 agtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagtt 219  Q
    |||||| | ||||||||  ||| |||| ||| |||||||||||||||| |||||||||||||||||| ||||||||| || | |||| |||| || |  |    
T  7436714 agtcgagtcgaatcgaacctgtctgagctcgactcgactcgataagaaatggttcggctcgaaactccactcgagtttgaaacgaacctttt-ttcaact 7436812  T
Q  220 cgagttcggctcgtttcaaattcacga 246  Q
    |||||||||||||||| || |||||||    
T  7436813 cgagttcggctcgtttaaagttcacga 7436839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 250
Target Start/End: Original strand, 472837 - 472970
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | ||||| ||| ||| |||| ||| ||||||| |||||||||| | || | | |||||||||||| ||||||| | ||||| ||| || |    
T  472837 atgagtcgagtcgaatcaaatatgtatgagctcgactcgacttgataagaatttgctcagtttgaaactcgactcaagttcgacacgaactcttttttca 472936  T
Q  217 gttcgagttcggctcgtttcaaattcacgaacag 250  Q
    | ||||||||| ||||||| || |||||||||||    
T  472937 gctcgagttcgactcgtttaaagttcacgaacag 472970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 152 - 289
Target Start/End: Complemental strand, 3082425 - 3082288
Alignment:
Q  152 ctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacagc 251  Q
    ||||| || ||||||| ||||| |||||||||||||||| |||||||| | |||| |||| || |  ||||||||| ||||||| || ||||||| || |    
T  3082425 ctcgattcaataagaaatggttgggctcgaaactcgactagagttcgaaacgaacctttttttcaactcgagttcgactcgttttaagttcacgagcaac 3082326  T
Q  252 tcgactcgactcattagggtcaactcgtcagctcaaat 289  Q
    ||   ||||||| ||||| |||||||||  ||||||||    
T  3082325 tcagttcgactcgttaggttcaactcgtttgctcaaat 3082288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 268
Target Start/End: Complemental strand, 25181260 - 25181143
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacag 250  Q
    |||||||||| |||||||| | || |||||||||||  || |||||||| | ||||| ||| ||||| ||||||||| ||||||| |||||||| |||||    
T  25181260 gctcgactcgttaagaatttgctcagctcgaaactcagcttgagttcgacacgaactcttttttaagctcgagttcgactcgtttaaaattcacaaacag 25181161  T
Q  251 ctcgactcgactcattag 268  Q
     |||| ||| ||| ||||    
T  25181160 ttcgattcggctcgttag 25181143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 127 - 206
Target Start/End: Complemental strand, 11460879 - 11460800
Alignment:
Q  127 ttgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaac 206  Q
    |||| ||||| ||||||||  ||| ||||| |||||||||||||||| ||||||||||| ||||  |||| |||||||||    
T  11460879 ttgagtcgaacttgtttgaactcgactcgattcgataagaattggtttggctcgaaacttgacttaagtttgatatgaac 11460800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 4442089 - 4442042
Alignment:
Q  152 ctcgactcgataagaattggttcggctcgaaactcgactcgagttcga 199  Q
    ||||||||||||||||||  ||||||||||||||| |||| |||||||    
T  4442089 ctcgactcgataagaattaattcggctcgaaactcaactcaagttcga 4442042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 197
Target Start/End: Complemental strand, 8597498 - 8597452
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagttc 197  Q
    |||||||| ||||||||||||||| |||| |||||||||| ||||||    
T  8597498 gctcgactagataagaattggttcagctcaaaactcgacttgagttc 8597452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 9463790 - 9463707
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgttt 235  Q
    |||| ||||||| ||||||||||| ||| ||||||| |||||||||| | |  ||| |||| || || |||||||||||||||||    
T  9463790 gctcaactcgattagaattggttcagcttgaaactcaactcgagttcaaaacaaacctttt-tttagctcgagttcggctcgttt 9463707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 117 - 269
Target Start/End: Original strand, 18721 - 18873
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | ||| ||||| |||||||| |||||||||||||||||||||||||||||||| |||||||  |||||||||| | ||||| ||| || |    
T  18721 atgagtcgagtcgaaccgaatctgtttgagctcggctcgactcgataagaattggttcggctcaaaactcggttcgagttcgacacgaactattttttca 18820  T
Q  217 gttcgagttcggctcgtttcaaattcacgaacagctcgactcgactcattagg 269  Q
    | ||||||||||||||||| || ||||||||||| |||  ||| |||||||||    
T  18821 gctcgagttcggctcgtttaaagttcacgaacagttcggttcggctcattagg 18873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 117 - 269
Target Start/End: Original strand, 36926420 - 36926572
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | ||||||||  ||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||| || |    
T  36926420 atgagtcgagtcgaatcgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactattttttca 36926519  T
Q  217 gttcgagttcggctcgtttcaaattcacgaacagctcgactcgactcattagg 269  Q
      ||||||||||||| ||| |||||||||||||| |||| ||| ||| |||||    
T  36926520 tctcgagttcggctcatttaaaattcacgaacagttcgattcggctcgttagg 36926572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 37333741 - 37333842
Alignment:
Q  150 ggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaact-ttttgttaagttcgagttcggctcgtttcaaattcacgaac 248  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| || || ||||||||||||||||| || |||||||||    
T  37333741 ggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgatatgaactatttttttcagctcgagttcggctcgtttaaagttcacgaac 37333840  T
Q  249 ag 250  Q
    ||    
T  37333841 ag 37333842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 117 - 280
Target Start/End: Complemental strand, 17026127 - 17025963
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaa-ctttttgtta 215  Q
    ||||||||| | || ||||| |||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||| || | ||| |||||| ||     
T  17026127 atgagtcgagtcgagtcgaacttgtctgagctcgactcgactcgataagaattggttcggctcgaaactcgactcgagtttgaaacgaatcttttttttt 17026028  T
Q  216 agttcgagttcggctcgtttcaaattcacgaacagctcgactcgactcattagggtcaactcgtc 280  Q
    |  ||||||||||||||||| || ||| |||||| ||||  ||||||| ||||| ||||||||||    
T  17026027 aactcgagttcggctcgtttaaagttcgcgaacaactcggttcgactcgttaggttcaactcgtc 17025963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 155 - 269
Target Start/End: Original strand, 22074610 - 22074724
Alignment:
Q  155 gactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacagctcg 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |   | || | |||||||||||| ||||||||||||| ||||    
T  22074610 gactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttttatggctcaaattcggctcgtttaaaattcacgaacaactcg 22074709  T
Q  255 actcgactcattagg 269  Q
      ||||||| |||||    
T  22074710 gttcgactcgttagg 22074724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 143 - 269
Target Start/End: Original strand, 42071557 - 42071683
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattc 242  Q
    |||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||| | ||||| ||| || || ||||||||||||||||| || |||    
T  42071557 tgagctcggctcgactcaataagaattggttcggctcgaaactcggctcgagttcgacacgaactattttttcagctcgagttcggctcgtttaaagttc 42071656  T
Q  243 acgaacagctcgactcgactcattagg 269  Q
    |||||||| |||  ||||||| |||||    
T  42071657 acgaacagttcggttcgactcgttagg 42071683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 26215754 - 26215861
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattc 242  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||| || |  ||||||||||||||||| || |||    
T  26215754 tgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactattttttcaactcgagttcggctcgtttaaagttc 26215853  T
Q  243 acgaacag 250  Q
    ||||||||    
T  26215854 acgaacag 26215861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 143 - 249
Target Start/End: Complemental strand, 5776668 - 5776562
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattc 242  Q
    |||| |||||||||||||||||||||| |||| |||||||||||| ||||||||||| | ||||| ||| || || ||||||||||||||||| ||||||    
T  5776668 tgagctcggctcgactcgataagaattagttcagctcgaaactcggctcgagttcgacaagaactattttttcagctcgagttcggctcgtttaaaattc 5776569  T
Q  243 acgaaca 249  Q
    |||||||    
T  5776568 acgaaca 5776562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 138 - 276
Target Start/End: Complemental strand, 18250754 - 18250616
Alignment:
Q  138 ttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttca 237  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||| || | |||| |||| |  |  ||||||||||||||||| |    
T  18250754 ttgtttgagctcgactcgactcgataagaattggttcggctcgaaacttgactcgagtttgaaacgaaccttttctctaactcgagttcggctcgtttaa 18250655  T
Q  238 aattcacgaacagctcgactcgactcattagggtcaact 276  Q
    | ||||||||||| |||  ||||||| ||||| ||||||    
T  18250654 agttcacgaacagttcggttcgactcgttaggttcaact 18250616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 3931452 - 3931344
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaact-ttttgttaagttcgagttcggctcgtttcaaatt 241  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| |||| || || |||||||| |||||||| || ||    
T  3931452 tgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactatttttttcagctcgagttcagctcgtttaaagtt 3931353  T
Q  242 cacgaacag 250  Q
    |||||||||    
T  3931352 cacgaacag 3931344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 43052319 - 43052426
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattc 242  Q
    |||| |||||||||||||||||||||||||||||||||||||| | ||||||||||| | ||||| ||| || || ||||||||||||| ||| || |||    
T  43052319 tgagctcggctcgactcgataagaattggttcggctcgaaacttggctcgagttcgacacgaactattttttcagctcgagttcggctcatttaaagttc 43052418  T
Q  243 acgaacag 250  Q
    ||||||||    
T  43052419 acgaacag 43052426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 117 - 250
Target Start/End: Complemental strand, 666345 - 666212
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | ||| ||||  ||| |||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||| |  |||| ||| || |    
T  666345 atgagtcgagtcgaaccgaacatgtctgagctcggcttgactcgataagaattggttcggctcgaaactcggctcgagttcgacacaaactattttttca 666246  T
Q  217 gttcgagttcggctcgtttcaaattcacgaacag 250  Q
    | || |||||||||||||| || |||||||||||    
T  666245 gctcaagttcggctcgtttaaagttcacgaacag 666212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 117 - 250
Target Start/End: Original strand, 7443840 - 7443973
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | ||| ||||| ||| |||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||| |  |||| ||| || |    
T  7443840 atgagtcgagtcgaaccgaatctgtctgagctcggctcgactcgataagaattggttcggttcgaaactcggctcgagttcgacacaaactattttttca 7443939  T
Q  217 gttcgagttcggctcgtttcaaattcacgaacag 250  Q
    | |||||||| |||||||| |  |||||||||||    
T  7443940 gctcgagttcagctcgtttaatgttcacgaacag 7443973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 117 - 250
Target Start/End: Complemental strand, 7539780 - 7539647
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||| ||| |||| ||||| | || |||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||   ||| ||||| || |    
T  7539780 atgagccgagttgagtcgaactcgtctgagctcggctcgactcgataagaattggttcagctcgaaactcggctcgagttcgactcgaatttttttttca 7539681  T
Q  217 gttcgagttcggctcgtttcaaattcacgaacag 250  Q
    | ||||||||||||||||| || || ||||||||    
T  7539680 gctcgagttcggctcgtttaaagtttacgaacag 7539647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 132 - 246
Target Start/End: Original strand, 45054819 - 45054933
Alignment:
Q  132 tcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctc 231  Q
    ||||| |||| |||| | ||||||||||||||||||||||||||||| |||||||||||||||||| | | |||| |||| ||  | |||||||||||||    
T  45054819 tcgaacttgtctgagcttggctcgactcgataagaattggttcggcttgaaactcgactcgagttcaaaacgaacctttttttgggctcgagttcggctc 45054918  T
Q  232 gtttcaaattcacga 246  Q
    |||| || |||||||    
T  45054919 gtttaaagttcacga 45054933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 155 - 279
Target Start/End: Original strand, 10618070 - 10618194
Alignment:
Q  155 gactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaa-ctttttgttaagttcgagttcggctcgtttcaaattcacgaacagctc 253  Q
    |||||||||| ||||||||||| |||||||||||||||||| ||||||||| |||||| |||| || ||||||||||||||| || |||||||||| |||    
T  10618070 gactcgataaaaattggttcggttcgaaactcgactcgagtgcgatatgaaccttttttttaactt-gagttcggctcgtttaaagttcacgaacaactc 10618168  T
Q  254 gactcgactcattagggtcaactcgt 279  Q
       ||| ||| ||||| |||||||||    
T  10618169 agttcgcctcgttaggttcaactcgt 10618194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 150 - 279
Target Start/End: Complemental strand, 223039 - 222910
Alignment:
Q  150 ggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaaca 249  Q
    ||||||||||||||| |||| | ||||||||||||||||||||||||||| | ||||| ||| || || |||| || | ||||||| |||||||||||||    
T  223039 ggctcgactcgataaaaatttgctcggctcgaaactcgactcgagttcgacacgaactcttttttcagctcgaatttgactcgtttaaaattcacgaaca 222940  T
Q  250 gctcgactcgactcattagggtcaactcgt 279  Q
    | |||  ||| ||| ||||| |||| ||||    
T  222939 gttcggttcggctcgttaggttcaattcgt 222910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 117 - 269
Target Start/End: Complemental strand, 49035194 - 49035042
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||||| ||||| ||  ||| |||| ||||||||||| ||||||| || | |||||||||||||||||||||||| || | ||||| ||| || |    
T  49035194 atgagtcgaatcgaatcaaacatgtctgagctcggctcgacttgataagattttgctcggctcgaaactcgactcgagtttgacacgaactcttttttta 49035095  T
Q  217 gttcgagttcggctcgtttcaaattcacgaacagctcgactcgactcattagg 269  Q
    | ||||||||| ||| ||| |  ||||||||||| |||| ||| ||| |||||    
T  49035094 gctcgagttcgactcttttaaggttcacgaacagttcgattcggctcgttagg 49035042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 150 - 269
Target Start/End: Original strand, 8110803 - 8110922
Alignment:
Q  150 ggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaaca 249  Q
    ||||||||| ||||||||||| | | ||| |||||||| ||||||||||| | ||||| ||| || || |||||||| |||||||| || ||||| ||||    
T  8110803 ggctcgacttgataagaattgttccagcttgaaactcggctcgagttcgacacgaactcttttttcagctcgagttcagctcgtttaaagttcacaaaca 8110902  T
Q  250 gctcgactcgactcattagg 269  Q
    | |||| |||||||||||||    
T  8110903 gttcgattcgactcattagg 8110922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 151 - 249
Target Start/End: Original strand, 36471849 - 36471946
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaaca 249  Q
    |||||||||||||||||||| |||||||| ||||||||||| ||||||| |  ||| |||| |||| |||||||||||||| ||| ||||| |||||||    
T  36471849 gctcgactcgataagaattgattcggctcaaaactcgactcaagttcgaaacaaacctttt-ttaaattcgagttcggctcatttaaaatttacgaaca 36471946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 152 - 277
Target Start/End: Complemental strand, 33899699 - 33899574
Alignment:
Q  152 ctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacagc 251  Q
    ||||||||||||||||||| ||||||||||||||||  ||| |||| | | |||| |||| |  || ||||||||||||||||| || |||||||||  |    
T  33899699 ctcgactcgataagaattgattcggctcgaaactcggttcgggttcaaaacgaaccttttttctagctcgagttcggctcgtttaaagttcacgaaccac 33899600  T
Q  252 tcgactcgactcattagggtcaactc 277  Q
    |||  ||||||| ||||| |||||||    
T  33899599 tcggttcgactcgttaggttcaactc 33899574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 151 - 248
Target Start/End: Original strand, 41449192 - 41449289
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaac 248  Q
    ||||||||||||||||||||| ||||||||||| ||||||||| |||||||  ||| |||| |  || |||||||| |||||||| || |||||||||    
T  41449192 gctcgactcgataagaattggctcggctcgaaattcgactcgaattcgatacaaaccttttttctagctcgagttcagctcgtttaaagttcacgaac 41449289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 279
Target Start/End: Complemental strand, 8390246 - 8390105
Alignment:
Q  138 ttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttca 237  Q
    |||| |||| ||| ||||||||||||||||| || || ||||||||||| |||||| |||||||  ||| ||||  | || ||||||| ||||||||| |    
T  8390246 ttgtctgagctcgactcgactcgataagaatcggctcagctcgaaactcaactcgaattcgatacaaacctttttcttagctcgagtttggctcgtttaa 8390147  T
Q  238 aattcacgaacagctcgactcgactcattagggtcaactcgt 279  Q
      |||||||||| ||||  ||| ||| ||||| |||||||||    
T  8390146 tgttcacgaacaactcggttcggctcgttaggttcaactcgt 8390105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 248
Target Start/End: Complemental strand, 23236877 - 23236780
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaac 248  Q
    ||||||||||||||||||| | ||||||||||||||||||| | ||| ||| |||| |||| |  || | ||||||||||||||| || |||||||||    
T  23236877 gctcgactcgataagaattagctcggctcgaaactcgactcaaattcaatacgaaccttttttctagcttgagttcggctcgtttaaagttcacgaac 23236780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 254
Target Start/End: Complemental strand, 35544261 - 35544161
Alignment:
Q  153 tcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacagct 252  Q
    |||||||||||||||||||||||||||||||||||| | ||||| || |  ||| |||   ||| || ||||||||||||||| || |||||||||||||    
T  35544261 tcgactcgataagaattggttcggctcgaaactcgatttgagtttgaaacaaacatttctctaactt-gagttcggctcgtttaaagttcacgaacagct 35544163  T
Q  253 cg 254  Q
    ||    
T  35544162 cg 35544161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 280
Target Start/End: Complemental strand, 18740954 - 18740825
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacag 250  Q
    |||||||||||||||||||| ||||| ||  ||||||||||||||| || |  ||  |||| ||||  ||||||||| ||||||| || ||||||||||     
T  18740954 gctcgactcgataagaattgattcggttcataactcgactcgagtttgaaacaaatctttttttaaactcgagttcgactcgtttaaagttcacgaacaa 18740855  T
Q  251 ctcgactcgactcattagggtcaactcgtc 280  Q
    ||||  ||| ||| ||||| |||| |||||    
T  18740854 ctcggttcggctcgttaggttcaattcgtc 18740825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 5795623 - 5795559
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcga 181  Q
    ||||||||| | ||||||||  ||  |||| ||||||||||||||||||||||||||||||||||    
T  5795623 atgagtcgagtcgaatcgaacctgcctgagctcggctcgactcgataagaattggttcggctcga 5795559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 39429503 - 39429583
Alignment:
Q  155 gactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgttt 235  Q
    ||||||||||||||||||||| ||||||||| || |||||||||| | ||||| ||| ||||  ||||||||  |||||||    
T  39429503 gactcgataagaattggttcgactcgaaacttgattcgagttcgacacgaactcttttttaaactcgagttcaactcgttt 39429583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 20260044 - 20259977
Alignment:
Q  132 tcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcga 199  Q
    ||||||| || |||| ||| ||||||||||||||||||||||| |||  ||||||| |||||||||||    
T  20260044 tcgaattcgtctgagctcgactcgactcgataagaattggttcagcttaaaactcggctcgagttcga 20259977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 181
Target Start/End: Original strand, 388438 - 388502
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcga 181  Q
    ||||||||| | ||| |||| |||  |||| |||| |||||||||||||||||||||||||||||    
T  388438 atgagtcgagtcgaaccgaacttgcctgagctcggttcgactcgataagaattggttcggctcga 388502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 11596521 - 11596485
Alignment:
Q  152 ctcgactcgataagaattggttcggctcgaaactcga 188  Q
    ||||||||||||||||||||||| |||||||||||||    
T  11596521 ctcgactcgataagaattggttcagctcgaaactcga 11596485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 181
Target Start/End: Original strand, 45174648 - 45174712
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcga 181  Q
    ||||||||| | ||| ||||  ||| |||| |||||||||||| |||||||||||||||||||||    
T  45174648 atgagtcgagtcgaaccgaacctgtctgagctcggctcgactcaataagaattggttcggctcga 45174712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 15433666 - 15433704
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcga 181  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  15433666 tgagctcggcttgactcgataagaattggttcggctcga 15433704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 181
Target Start/End: Original strand, 26719199 - 26719229
Alignment:
Q  151 gctcgactcgataagaattggttcggctcga 181  Q
    |||||||||||||||||||||||||||||||    
T  26719199 gctcgactcgataagaattggttcggctcga 26719229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 143 - 181
Target Start/End: Complemental strand, 28950397 - 28950359
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcga 181  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  28950397 tgagctcggctcaactcgataagaattggttcggctcga 28950359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 388498 - 388559
Alignment:
Q  189 ctcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacag 250  Q
    ||||||||||| | ||||| ||| || || ||||||||||||||||| || |||||||||||    
T  388498 ctcgagttcgacacgaactattttttcagctcgagttcggctcgtttaaagttcacgaacag 388559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 33172232 - 33172195
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcga 188  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  33172232 gctcgattcgataagaattggctcggctcgaaactcga 33172195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 279
Target Start/End: Original strand, 48633289 - 48633417
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacag 250  Q
    ||||||||||||| ||||  | || |||| |||||| ||||||||||||||  ||| |||| || |  |||||| |||||||||| |  ||||||| ||     
T  48633289 gctcgactcgatatgaatcagctcagctcaaaactcaactcgagttcgatactaaccttttttttaactcgagtccggctcgtttaatgttcacgagcaa 48633388  T
Q  251 ctcgactcgactcattagggtcaactcgt 279  Q
    ||||| |||| || ||||| |||| ||||    
T  48633389 ctcgattcgattcgttaggttcaaatcgt 48633417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 49820415 - 49820522
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattc 242  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||| || || ||||||||||||||||| || |||    
T  49820415 tgagctcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgacacgaactattttttcagctcgagttcggctcgtttaaagttc 49820514  T
Q  243 acgaacag 250  Q
    ||||||||    
T  49820515 acgaacag 49820522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 117 - 248
Target Start/End: Original strand, 53369073 - 53369204
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | ||| ||||| ||  |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||| || |    
T  53369073 atgagtcgagtcgaaccgaatctgcctgagttcggctcaactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactattttttca 53369172  T
Q  217 gttcgagttcggctcgtttcaaattcacgaac 248  Q
    | ||||||||||||||||| || |||||||||    
T  53369173 gctcgagttcggctcgtttaaagttcacgaac 53369204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 143 - 269
Target Start/End: Original strand, 9469464 - 9469590
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattc 242  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||| || || |||||||||| |||||| || |||    
T  9469464 tgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactattttttcagctcgagttcggatcgtttaaagttc 9469563  T
Q  243 acgaacagctcgactcgactcattagg 269  Q
    |||||||| |||| ||| ||| |||||    
T  9469564 acgaacagttcgattcggctcgttagg 9469590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 148 - 249
Target Start/End: Original strand, 48977046 - 48977147
Alignment:
Q  148 tcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaa 247  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||| | ||||| ||| || || ||||||||||||||||| |||||||||||    
T  48977046 tcggctcgattcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactattttttcagctcgagttcggctcgtttaaaattcacgaa 48977145  T
Q  248 ca 249  Q
    ||    
T  48977146 ca 48977147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 117 - 250
Target Start/End: Original strand, 50605466 - 50605599
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | ||| ||||  ||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||| || |    
T  50605466 atgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactattttttca 50605565  T
Q  217 gttcgagttcggctcgtttcaaattcacgaacag 250  Q
    | |||||||||||| |||| || |||||||||||    
T  50605566 gctcgagttcggcttgtttaaagttcacgaacag 50605599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 117 - 250
Target Start/End: Original strand, 19850143 - 19850276
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | ||| ||||  ||| |||| |||||||||||||||||  ||||||||||||||||||||| ||||||||||| | ||||| ||| || |    
T  19850143 atgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataaacattggttcggctcgaaactcggctcgagttcgacacgaactattttttca 19850242  T
Q  217 gttcgagttcggctcgtttcaaattcacgaacag 250  Q
    | ||||||||||||||||| || |||||||||||    
T  19850243 gctcgagttcggctcgtttaaagttcacgaacag 19850276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 117 - 250
Target Start/End: Original strand, 21436318 - 21436451
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | ||| ||||  ||| |||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||| | | ||| ||| || |    
T  21436318 atgagtcgagtcgaaccgaacctgtctgagttcggctcgactcgataagaattgattcggctcgaaactcggctcgaattcgacacggactattttttca 21436417  T
Q  217 gttcgagttcggctcgtttcaaattcacgaacag 250  Q
    | ||||||||||||||||| || |||||||||||    
T  21436418 gctcgagttcggctcgtttaaagttcacgaacag 21436451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 117 - 235
Target Start/End: Original strand, 52705604 - 52705722
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | || ||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||  | |||||| |||| ||      
T  52705604 atgagtcgagtcgagtcgaacttgtctgagctcggctcgactcgataagaattggttcggctcgaaactcgattcgagtttaaaatgaacctttttttgg 52705703  T
Q  217 gttcgagttcggctcgttt 235  Q
    | |||||||||||||||||    
T  52705704 gctcgagttcggctcgttt 52705722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 132 - 269
Target Start/End: Complemental strand, 51409228 - 51409091
Alignment:
Q  132 tcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctc 231  Q
    ||||| |||| |||| ||| |||||||||||||||||| |||||||||||||||||| |||||||||| | ||||| ||| || || ||||||||| |||    
T  51409228 tcgaacttgtctgagctcgactcgactcgataagaatttgttcggctcgaaactcgattcgagttcgacacgaactatttttttagctcgagttcgactc 51409129  T
Q  232 gtttcaaattcacgaacagctcgactcgactcattagg 269  Q
    |||| || |||||| |||| ||| |||| ||| |||||    
T  51409128 gtttaaagttcacgtacagttcggctcggctcgttagg 51409091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 151 - 269
Target Start/End: Complemental strand, 28266839 - 28266721
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacag 250  Q
    |||||||| |||||||||| | ||||||||||||||||||||||||||| | ||||| ||| || || ||||||||| ||||||| || |||||||||||    
T  28266839 gctcgactggataagaatttgctcggctcgaaactcgactcgagttcgacacgaactctttttttagctcgagttcgactcgtttaaagttcacgaacag 28266740  T
Q  251 ctcgactcgactcattagg 269  Q
     |||  ||||||| |||||    
T  28266739 ttcggttcgactcgttagg 28266721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 151 - 278
Target Start/End: Original strand, 44377650 - 44377777
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgt-taagttcgagttcggctcgtttcaaattcacgaaca 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || | |||| |||| | ||| || ||||||||||||||| || ||||||||||    
T  44377650 gctcgactcgataagaattggttcggctcgaaactcgactcgagtttgaaacgaaccttttctctaactt-gagttcggctcgtttaaagttcacgaaca 44377748  T
Q  250 gctcgactcgactcattagggtcaactcg 278  Q
     || |  ||| ||| ||||| ||||||||    
T  44377749 acttggttcggctcgttaggttcaactcg 44377777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 143 - 274
Target Start/End: Original strand, 43386571 - 43386702
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattc 242  Q
    |||| ||| |||||||||||||||||| | |||||| |||||||||||||||||||| | ||||| ||| || || |||| |||| ||||||| || |||    
T  43386571 tgagctcgactcgactcgataagaatttgctcggcttgaaactcgactcgagttcgacacgaactcttttttcagctcgaattcgactcgtttaaagttc 43386670  T
Q  243 acgaacagctcgactcgactcattagggtcaa 274  Q
    |||||||| |||  ||||||| ||||| ||||    
T  43386671 acgaacagttcggttcgactcgttaggttcaa 43386702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 117 - 195
Target Start/End: Original strand, 7505435 - 7505513
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagt 195  Q
    ||||||||| | || ||||| |||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7505435 atgagtcgagtcgagtcgaacttgtctgagctcggctcgactcgataagaattgattcggctcgaaactcgactcgagt 7505513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 117 - 235
Target Start/End: Original strand, 51994094 - 51994212
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | |||||||||  || |||| ||| ||||||||| ||||||||||||| ||||||||||||||||||||||||   ||||||||| ||||    
T  51994094 atgagtcgagtcgaatcgaatccgtctgagctcgactcgactcgttaagaattggttcagctcgaaactcgactcgagttcgaaccgaacttttttttaa 51994193  T
Q  217 gttcgagttcggctcgttt 235  Q
    | || |  |||||||||||    
T  51994194 gctcaaactcggctcgttt 51994212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 152 - 263
Target Start/End: Original strand, 52813045 - 52813156
Alignment:
Q  152 ctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacagc 251  Q
    |||||||||||||||||| | |||||| |||||||||||||||||||| | ||||| ||| || || |||| |||| ||||||| || |||||||||||     
T  52813045 ctcgactcgataagaatttgctcggcttgaaactcgactcgagttcgacacgaactcttttttcagctcgaattcgcctcgtttaaagttcacgaacagt 52813144  T
Q  252 tcgactcgactc 263  Q
    |||  |||||||    
T  52813145 tcggttcgactc 52813156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 79771 - 79853
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcga 199  Q
    ||||||||||| ||||||||  ||| | |||||||||||||||||||||| || | |||| ||||||||||||||||||||||    
T  79771 atgagtcgaatcgaatcgaacctgtctaagttcggctcgactcgataagattttgctcggttcgaaactcgactcgagttcga 79853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 117 - 234
Target Start/End: Original strand, 25133944 - 25134061
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | || |||||| ||| |||| ||| ||||||||||||||||||||||||||||||||| ||  |||||||||| | |||| |||| |  |    
T  25133944 atgagtcgagtcgagtcgaatctgtctgagctcgactcgactcgataagaattggttcggctcgaaacccggttcgagttcgaaacgaacattttttcta 25134043  T
Q  217 gttcgagttcggctcgtt 234  Q
    | || |||||||||||||    
T  25134044 gctcaagttcggctcgtt 25134061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 143 - 241
Target Start/End: Complemental strand, 46945278 - 46945180
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaatt 241  Q
    |||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| || |  ||| |||| || |  |||| |||||||||||| |||||    
T  46945278 tgagctcgactcaactcgataagaattggttcggctcgaaactcgactcgagtttgaaacaaaccttttttttaactcgaattcggctcgtttaaaatt 46945180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 143 - 244
Target Start/End: Original strand, 1803204 - 1803305
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattc 242  Q
    ||||||||  |||| ||||||| ||||||||||| |||||||| |||||||||||||   |||| |||| ||||| |||||||||| |||||| || |||    
T  1803204 tgagttcgattcgattcgataaaaattggttcggttcgaaacttgactcgagttcgaagcgaacctttttttaagctcgagttcggttcgtttaaagttc 1803303  T
Q  243 ac 244  Q
    ||    
T  1803304 ac 1803305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 16743214 - 16743169
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagtt 196  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  16743214 gctcgactcgataagaattggttcggctcgaaactcgactcaagtt 16743169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 22720767 - 22720836
Alignment:
Q  129 gaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcg 198  Q
    |||||||| | || |||| ||||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  22720767 gaatcgaactagtctgagctcggctcaactcgataagaattggttcggctcgaaactcgatacgagttcg 22720836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 4275645 - 4275589
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcga 199  Q
    |||| ||| ||||||||||||||||||||||| |||||||||||| |||||||||||    
T  4275645 tgagctcgactcgactcgataagaattggttcagctcgaaactcggctcgagttcga 4275589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 24009518 - 24009426
Alignment:
Q  158 tcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacag 250  Q
    |||||||||||||||||  |||||||| |||||||||||| | | |||| |||| || || |||||||| |||||||| || |||||||||||    
T  24009518 tcgataagaattggttcaactcgaaacccgactcgagttcaaaacgaaccttttttttagctcgagttctgctcgtttaaagttcacgaacag 24009426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 40797165 - 40797245
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttc 197  Q
    ||||||||| | || |||||| ||| |||| ||| |||||||||||||||||||||||||||||||||  | |||||||||    
T  40797165 atgagtcgagtcgagtcgaatctgtctgagctcgactcgactcgataagaattggttcggctcgaaacatggctcgagttc 40797245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 52812978 - 52813054
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcga 193  Q
    ||||||||| | ||| ||||  ||| ||||||||||||||||||||||||||| | |||||| ||||||||||||||    
T  52812978 atgagtcgagtcgaaccgaacctgtctgagttcggctcgactcgataagaatttgctcggcttgaaactcgactcga 52813054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 22183800 - 22183907
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattc 242  Q
    |||| |||| |||||| |||||||||| | ||||||| ||||||||||||||||||| | ||||| ||| || || |||| || | ||||||| || |||    
T  22183800 tgagctcggatcgacttgataagaatttgctcggctcaaaactcgactcgagttcgacacgaactcttttttcagctcgaatttgactcgtttaaagttc 22183899  T
Q  243 acgaacag 250  Q
    ||||||||    
T  22183900 acgaacag 22183907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 50240997 - 50240890
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattc 242  Q
    |||| ||| ||||||||| ||| ||||||||| ||||||||||| |||||||||||| |  ||| |||| || || ||| |||||||||| || |||||     
T  50240997 tgagctcgactcgactcgttaaaaattggttcagctcgaaactctactcgagttcgaaacaaaccttttttttagctcgtgttcggctcgcttaaaatta 50240898  T
Q  243 acgaacag 250  Q
    ||||||||    
T  50240897 acgaacag 50240890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 244
Target Start/End: Complemental strand, 50711536 - 50711443
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcac 244  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||| | | |||  |||| |  || ||||||||||||||||| || |||||    
T  50711536 gctcgactcgataagaattggttcggctcaaaactcggttcgagttcaaaacgaatcttttttctagctcgagttcggctcgtttaaagttcac 50711443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 279
Target Start/End: Complemental strand, 54625870 - 54625745
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacag 250  Q
    ||||||||| ||||||||||||||  ||| |||||| ||||| ||||||||||||  |||| ||||  |||||||| |||||||| ||  || ||||||     
T  54625870 gctcgactcaataagaattggttcaactcaaaactcaactcgggttcgatatgaa--tttttttaa-ctcgagttcagctcgtttaaagctcgcgaacaa 54625774  T
Q  251 ctcgactcgactcattagggtcaactcgt 279  Q
     |||| ||||||||||| | |||||||||    
T  54625773 ttcgattcgactcattaagttcaactcgt 54625745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 44792910 - 44792846
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcga 181  Q
    ||||||||| | ||| ||||  ||| |||| ||||||||||||||||||||||||||||||||||    
T  44792910 atgagtcgagtcgaaccgaacctgtatgagctcggctcgactcgataagaattggttcggctcga 44792846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 5765325 - 5765250
Alignment:
Q  132 tcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaact 207  Q
    ||||| |||| |||| ||| ||| ||||  |||||| | ||||||||||||||||||||||| |||||||||||||    
T  5765325 tcgaacttgtctgagctcgactcaactctttaagaaatagttcggctcgaaactcgactcgaattcgatatgaact 5765250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 5767569 - 5767494
Alignment:
Q  132 tcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaact 207  Q
    ||||| |||| |||| ||| ||| ||||  |||||| | ||||||||||||||||||||||| |||||||||||||    
T  5767569 tcgaacttgtctgagctcgactcaactctttaagaaatagttcggctcgaaactcgactcgaattcgatatgaact 5767494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 36543365 - 36543438
Alignment:
Q  177 ctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacag 250  Q
    ||||||||||| ||||||||||| |  |||| ||| || || ||||||||||||||||| || |||||||||||    
T  36543365 ctcgaaactcggctcgagttcgacacaaactattttttcagctcgagttcggctcgtttaaagttcacgaacag 36543438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 38493721 - 38493652
Alignment:
Q  129 gaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcg 198  Q
    |||||||| | || |||||||| |||||| ||||||||||| | |||||| ||||||||| |||||||||    
T  38493721 gaatcgaactcgtctgagttcgactcgacccgataagaattagatcggcttgaaactcgaatcgagttcg 38493652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 178
Target Start/End: Original strand, 45674341 - 45674376
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggct 178  Q
    |||| |||||||||||||||||||||||||||||||    
T  45674341 tgagctcggctcgactcgataagaattggttcggct 45674376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 248
Target Start/End: Complemental strand, 48151832 - 48151735
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaa-ctttttgttaagttcgagttcggctcgtttcaaattcacgaac 248  Q
    ||||||||||||||||||||| ||||||| ||| | ||||||| ||| ||| ||| ||||||  |||  ||||||||| ||||||| || |||||||||    
T  48151832 gctcgactcgataagaattggctcggctcaaaatttgactcgaattcaatacgaacctttttcctaa-ctcgagttcgactcgtttaaagttcacgaac 48151735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 5769840 - 5769795
Alignment:
Q  162 taagaattggttcggctcgaaactcgactcgagttcgatatgaact 207  Q
    |||||| | ||||||||||||||||||||||| ||||||| |||||    
T  5769840 taagaaatagttcggctcgaaactcgactcgaattcgatacgaact 5769795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 11055936 - 11055891
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcga 188  Q
    |||||||| ||||||||| |||||||||  ||||||||||||||||    
T  11055936 tgagttcgactcgactcggtaagaattgactcggctcgaaactcga 11055891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 12790275 - 12790211
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcga 181  Q
    ||||||||| | ||| ||||  ||| |||| ||||||||| |||||||||||||| |||||||||    
T  12790275 atgagtcgagtcgaaccgaacctgtctgagctcggctcgattcgataagaattggctcggctcga 12790211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 35778525 - 35778569
Alignment:
Q  152 ctcgactcgataagaattggttcggctcgaaactcgactcgagtt 196  Q
    |||||||||||||||||| ||||||||| ||| ||||||| ||||    
T  35778525 ctcgactcgataagaattagttcggctcaaaattcgactcaagtt 35778569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 55892800 - 55892736
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcga 181  Q
    ||||||||| | ||||||||| | | |||| ||| |||||||||||||||||| | |||||||||    
T  55892800 atgagtcgagtcgaatcgaatctatctgagctcgactcgactcgataagaatttgctcggctcga 55892736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 6e-32; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 151 - 289
Target Start/End: Original strand, 10493419 - 10493557
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacag 250  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| | |||| |||| || |  || |||||||||||||| || ||||||| ||     
T  10493419 gctcgactcgataagaaatggttcggctcgaaactcgactcgagttcgaaacgaacctttttttcaactcaagttcggctcgtttaaagttcacgagcaa 10493518  T
Q  251 ctcgactcgactcattagggtcaactcgtcagctcaaat 289  Q
    ||||| ||||||||||||| |||||||||  ||||||||    
T  10493519 ctcgattcgactcattaggttcaactcgtttgctcaaat 10493557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 117 - 250
Target Start/End: Original strand, 18879631 - 18879764
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | ||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| | ||||| ||| || |    
T  18879631 atgagtcgagtcgaaccgaatctgtctgagttcggctcgactcgataagaattggttcggctcgaaacttggctcgagttcgacacgaactattttttca 18879730  T
Q  217 gttcgagttcggctcgtttcaaattcacgaacag 250  Q
    | ||||||||||||| ||| || |||||||||||    
T  18879731 gctcgagttcggctcatttaaagttcacgaacag 18879764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 153 - 250
Target Start/End: Original strand, 39407028 - 39407125
Alignment:
Q  153 tcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacag 250  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||| ||||| ||||||||||||||||| || |||||||||||    
T  39407028 tcgactcgataagaattggttcggttcgaaactcgactcgagttcgaagtgaacttttttttaagctcgagttcggctcgtttaaagttcacgaacag 39407125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 153 - 250
Target Start/End: Original strand, 39408766 - 39408863
Alignment:
Q  153 tcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacag 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| ||||| ||||||||||||||||| || |||||||||||    
T  39408766 tcgactcgataagaattggttcggctcgaaactcgactcgagttcgaagcgaacttttttttaagctcgagttcggctcgtttaaagttcacgaacag 39408863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 153 - 250
Target Start/End: Original strand, 26299493 - 26299590
Alignment:
Q  153 tcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacag 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||| ||||  ||||||||||||||||| || |||||||||||    
T  26299493 tcgactcgataagaattggttcggctcgaaactcgactcgagttcgaagtgaacctttttttaaactcgagttcggctcgtttaaagttcacgaacag 26299590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 117 - 234
Target Start/End: Original strand, 34856957 - 34857074
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | || |||||| ||| ||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||   |||| |||| ||||    
T  34856957 atgagtcgagtcgagtcgaatctgtctgagttcgattcgactcgataagaattggttcggctcgaaacttgactcgagttcgaagcgaacatttttttaa 34857056  T
Q  217 gttcgagttcggctcgtt 234  Q
    ||||||||||||||||||    
T  34857057 gttcgagttcggctcgtt 34857074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 143 - 254
Target Start/End: Complemental strand, 1841080 - 1840969
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattc 242  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||| || |  ||||||||||||||||| || |||    
T  1841080 tgagctcgactcgactcgataagaattggttcggctcgaaactcgactcgagttcgatacgaaccctttttttaactcgagttcggctcgtttaaagttc 1840981  T
Q  243 acgaacagctcg 254  Q
    ||||||| ||||    
T  1840980 acgaacaactcg 1840969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 153 - 250
Target Start/End: Complemental strand, 34720156 - 34720059
Alignment:
Q  153 tcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacag 250  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||   ||||||||| ||||| |||||||| |||||||| || |||||||||||    
T  34720156 tcgactcgataagaattggttcggttcgaaactcgactcgagttcgaagcgaacttttttttaagctcgagttcagctcgtttaaagttcacgaacag 34720059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 148 - 246
Target Start/End: Complemental strand, 32157483 - 32157385
Alignment:
Q  148 tcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacga 246  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||| | ||||| ||| || || ||||||||||||||||| || |||||||    
T  32157483 tcggctcgactcgataagaattggttcggctcgaaacttggctcgagttcgacacgaactattttttcagctcgagttcggctcgtttaaagttcacga 32157385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 117 - 234
Target Start/End: Complemental strand, 3805502 - 3805385
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | ||| ||||  ||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||| || |    
T  3805502 atgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactattttttca 3805403  T
Q  217 gttcgagttcggctcgtt 234  Q
    | |||||||| |||||||    
T  3805402 gctcgagttcagctcgtt 3805385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 153 - 250
Target Start/End: Complemental strand, 27451083 - 27450986
Alignment:
Q  153 tcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacag 250  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||   |||| |||| ||||  ||||||||||||||||| || |||||||||||    
T  27451083 tcgactcgataagaattggttcggctcgaaactcaactcgagttcgaagcgaacatttttttaaactcgagttcggctcgtttaaagttcacgaacag 27450986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 19283713 - 19283554
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | |||||||| || | |||| ||| ||||||||||||||||||||||  |||||||||||||||||||||||||| |||| |||| ||||    
T  19283713 atgagtcgagtagaatcgaacttatctgagctcgactcgactcgataagaattggtttagctcgaaactcgactcgagttcgatacgaacctttttttaa 19283614  T
Q  217 gttcgagttcggctcgtttcaaattcacgaacagctcgactcgactcattagggtcaactc 277  Q
      ||||||||  ||  ||| || |||||||||| ||||  ||||||||||||  |||||||    
T  19283613 -ctcgagttctactgatttaaagttcacgaacaactcggttcgactcattagattcaactc 19283554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 26297952 - 26298046
Alignment:
Q  153 tcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaa 247  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||   |||| |||| ||||  ||||||||||||||||| || ||||||||    
T  26297952 tcgactcgataagaattggttcggctcgaaactcgattcgagttcgaagcgaacctttttttaaactcgagttcggctcgtttaaagttcacgaa 26298046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 117 - 246
Target Start/End: Original strand, 26217434 - 26217563
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | || ||||| |||| |||| |||| ||||||| ||||||||||||||||||||||||||||||||||||| | | |||| |||| ||      
T  26217434 atgagtcgagtcgagtcgaacttgtctgagctcggttcgactcaataagaattggttcggctcgaaactcgactcgagttcaaaacgaacctttttttgg 26217533  T
Q  217 gttcgagttcggctcgtttcaaattcacga 246  Q
    | || |||||||||||||| || |||||||    
T  26217534 gctccagttcggctcgtttaaagttcacga 26217563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 117 - 250
Target Start/End: Original strand, 27905491 - 27905624
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | ||| |||| || | |||| ||||||||||| |||||||||||||||||| ||||||||| ||||||||||| | ||||| ||| || |    
T  27905491 atgagtcgagtcgaaccgaacttatctgagctcggctcgacttgataagaattggttcggcacgaaactcggctcgagttcgacacgaactattttttca 27905590  T
Q  217 gttcgagttcggctcgtttcaaattcacgaacag 250  Q
    |  ||| |||||||||||| || |||||||||||    
T  27905591 gcccgaattcggctcgtttaaagttcacgaacag 27905624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 138 - 246
Target Start/End: Complemental strand, 4984073 - 4983965
Alignment:
Q  138 ttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttca 237  Q
    |||| |||| ||||||||||||||||||||||||||| ||| |||||||||||||||||| | | |||| |||| ||  | ||||||||||||||||| |    
T  4984073 ttgtctgagctcggctcgactcgataagaattggttcagcttgaaactcgactcgagttcaaaacgaacctttttttgggctcgagttcggctcgtttaa 4983974  T
Q  238 aattcacga 246  Q
    | |||||||    
T  4983973 agttcacga 4983965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 19715799 - 19715913
Alignment:
Q  132 tcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctc 231  Q
    ||||| |||| |||| |||  |||||||||||| ||||||||||||||||||||||||||||||||||   |||| |||| ||||  |||||||||||||    
T  19715799 tcgaacttgtctgagctcgattcgactcgataataattggttcggctcgaaactcgactcgagttcgaagcgaacctttt-ttaaactcgagttcggctc 19715897  T
Q  232 gtttcaaattcacgaa 247  Q
    |||| || ||||||||    
T  19715898 gtttaaagttcacgaa 19715913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 143 - 254
Target Start/End: Original strand, 27195460 - 27195571
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattc 242  Q
    |||| ||| |||||||| |||||||||||||||||||||||||| ||||||||| || | |||| |||| |  |  ||||||||||||||||| || |||    
T  27195460 tgagctcgactcgactcaataagaattggttcggctcgaaactctactcgagtttgaaacgaaccttttctctaactcgagttcggctcgtttaaagttc 27195559  T
Q  243 acgaacagctcg 254  Q
    ||||||||||||    
T  27195560 acgaacagctcg 27195571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 14501460 - 14501398
Alignment:
Q  132 tcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgag 194  Q
    |||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  14501460 tcgaatttgtctgagctcggctcgactcgataagaatcggttcggctcgaaactcgactcgag 14501398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 250
Target Start/End: Complemental strand, 34724132 - 34724035
Alignment:
Q  153 tcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacag 250  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||   |||| |||| ||||| |||||||| ||||||||  | |||||||||||    
T  34724132 tcgactcgataagaattggttcagttcgaaactcgactcgagttcgaagcgaacctttttttaagctcgagttcagctcgtttagagttcacgaacag 34724035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 143 - 247
Target Start/End: Original strand, 43385835 - 43385940
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaac-tttttgttaagttcgagttcggctcgtttcaaatt 241  Q
    |||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||| |  ||| ||||| || || | ||||||||||||||| || ||    
T  43385835 tgagctcggctcgactcgataagaattggttcagctcgaaactcggctcgagttcgacacaaactttttttttcagcttgagttcggctcgtttaaagtt 43385934  T
Q  242 cacgaa 247  Q
    ||||||    
T  43385935 cacgaa 43385940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 28430594 - 28430698
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaa-ctttttgttaagttcgagttcggctcgtttcaaattcacgaaca 249  Q
    ||||||||||||||||||| |||| |||| ||||||||||||||||||||| ||| |||||  || | |||||||||||||||||| || || |||||||    
T  28430594 gctcgactcgataagaattagttcagctcaaaactcgactcgagttcgatacgaaccttttcttttaattcgagttcggctcgtttaaagttaacgaaca 28430693  T
Q  250 gctcg 254  Q
     ||||    
T  28430694 actcg 28430698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 41782748 - 41782834
Alignment:
Q  160 gataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacga 246  Q
    |||||||||||||||||||||||||||||||||||||| | | |||| |||| ||  | ||||||||||||||||| || |||||||    
T  41782748 gataagaattggttcggctcgaaactcgactcgagttcaaaacgaacctttttttgggctcgagttcggctcgtttaaagttcacga 41782834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 117 - 250
Target Start/End: Original strand, 1224575 - 1224708
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||||| ||||||||  ||| | || |||||||||||| |||||| || | ||| ||||||||||||||||||||||| | ||||| ||| ||      
T  1224575 atgagtcgaatcgaatcgaacctgtctaagctcggctcgactcaataagattttgctcgactcgaaactcgactcgagttcgacacgaactctttattcc 1224674  T
Q  217 gttcgagttcggctcgtttcaaattcacgaacag 250  Q
    | ||||||||| ||||||| |  |||||||||||    
T  1224675 gctcgagttcgactcgtttaaggttcacgaacag 1224708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 117 - 246
Target Start/End: Complemental strand, 11136792 - 11136663
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | || ||||| |||| |||  ||||||||| ||||||||||| |||||||||||||||||||||||||||| | | |||| |||| ||      
T  11136792 atgagtcgagtcgagtcgaacttgtctgaactcggctcgattcgataagaataggttcggctcgaaactcgactcgagttcaaaacgaacctttttttgg 11136693  T
Q  217 gttcgagttcggctcgtttcaaattcacga 246  Q
    | ||||| |||| |||||| || |||||||    
T  11136692 gctcgagctcggttcgtttaaagttcacga 11136663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 117 - 249
Target Start/End: Complemental strand, 5385218 - 5385086
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | |||||||| || | |||| |||  |||| ||||| | |||| ||||||||||||||| ||||||||||| | | ||||| ||| || |    
T  5385218 atgagtcgagtcgaatcgaacttttctgagctcgattcgattcgattaaaatttgttcggctcgaaacttgactcgagttcaacacgaactcttttttta 5385119  T
Q  217 gttcgagttcggctcgtttcaaattcacgaaca 249  Q
    | ||||||||| ||||||| || ||||||||||    
T  5385118 gctcgagttcgactcgtttaaagttcacgaaca 5385086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 277
Target Start/End: Complemental strand, 40057904 - 40057779
Alignment:
Q  153 tcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaa--ctttttgttaagttcgagttcggctcgtttcaaattcacgaacag 250  Q
    |||||||||||| ||||||||| ||| ||||||| | ||||||||||||  ||  |||||| ||||  |||||||||||| ||||||| |||||||||      
T  40057904 tcgactcgataaaaattggttcagcttgaaactcaattcgagttcgatacaaaaccttttttttaa-ctcgagttcggcttgtttcaagttcacgaacca 40057806  T
Q  251 ctcgactcgactcattagggtcaactc 277  Q
    ||||  || |||||||||| |||||||    
T  40057805 ctcggttcaactcattaggttcaactc 40057779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 144 - 250
Target Start/End: Original strand, 15931975 - 15932081
Alignment:
Q  144 gagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattca 243  Q
    ||||||| ||||||||||||||||||||||| ||| ||||||||  |||||||| | | ||||| ||| ||    |||||||||| |||||| || ||||    
T  15931975 gagttcgactcgactcgataagaattggttcagcttgaaactcggttcgagttcaacacgaactcttttttcgactcgagttcggttcgtttaaagttca 15932074  T
Q  244 cgaacag 250  Q
    |||||||    
T  15932075 cgaacag 15932081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 269
Target Start/End: Original strand, 28242439 - 28242548
Alignment:
Q  160 gataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacagctcgactcg 259  Q
    |||||||||||||| |||||||||||||| ||||||| || |  ||| |||| || |  | ||||||||||| ||| || |||||||||| ||||| |||    
T  28242439 gataagaattggtttggctcgaaactcgaatcgagtttgaaacaaaccttttctttaacttgagttcggctcatttaaagttcacgaacaactcgattcg 28242538  T
Q  260 actcattagg 269  Q
    |||| |||||    
T  28242539 actcgttagg 28242548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 29322100 - 29322138
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcga 181  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  29322100 tgagctcggctcgactcgataagaattggttcggctcga 29322138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 129 - 250
Target Start/End: Original strand, 2675325 - 2675445
Alignment:
Q  129 gaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcgg 228  Q
    |||||||| |||| | |||||| ||||| ||| |||||||||| |||| |||||  |||  ||||| | |||| ||||||||| || || |||||||||     
T  2675325 gaatcgaacttgtctaagttcgactcgattcgttaagaattggctcggttcgaacttcggttcgagcttgatacgaacttttt-ttcagctcgagttcga 2675423  T
Q  229 ctcgtttcaaattcacgaacag 250  Q
    ||||||| || |||||||||||    
T  2675424 ctcgtttaaagttcacgaacag 2675445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 129 - 250
Target Start/End: Original strand, 20188373 - 20188494
Alignment:
Q  129 gaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcgg 228  Q
    |||||||| |||| |||||||| ||||||||  |||||||| |||||| ||||| ||||  ||||||| || | ||||||||| |  |  || ||||| |    
T  20188373 gaatcgaacttgtctgagttcgactcgactcattaagaatttgttcggttcgaatctcggatcgagtttgacacgaactttttttccaactcaagttccg 20188472  T
Q  229 ctcgtttcaaattcacgaacag 250  Q
    ||||||| || |||||||||||    
T  20188473 ctcgtttaaagttcacgaacag 20188494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 8056945 - 8056990
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagtt 196  Q
    |||||||||| |||||||||| |||||||||||||| ||| |||||    
T  8056945 gctcgactcgttaagaattggatcggctcgaaactcaacttgagtt 8056990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 38523313 - 38523253
Alignment:
Q  190 tcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacag 250  Q
    |||||||||| | ||||| ||| || || ||||||||||||||||| || |||||||||||    
T  38523313 tcgagttcgacacgaactattttttcagctcgagttcggctcgtttaaagttcacgaacag 38523253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 6e-29; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 117 - 250
Target Start/End: Original strand, 20986075 - 20986208
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | ||| ||||  ||| |||| |||||||||||||||||||||||||||||||||||||||| || |||||||| | ||||| ||| || |    
T  20986075 atgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggcttgagttcgacacgaactattttttca 20986174  T
Q  217 gttcgagttcggctcgtttcaaattcacgaacag 250  Q
    | ||||||||||||||||| || |||||||||||    
T  20986175 gctcgagttcggctcgtttaaagttcacgaacag 20986208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 36538114 - 36538221
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattc 242  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||| || || ||||||| ||||||||| || |||    
T  36538114 tgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactattttttcagctcgagtttggctcgtttaaagttc 36538213  T
Q  243 acgaacag 250  Q
    ||||||||    
T  36538214 acgaacag 36538221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 117 - 246
Target Start/End: Complemental strand, 2647729 - 2647600
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | || |||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||| | |  ||| |||| ||      
T  2647729 atgagtcgagtcgagtcgaatttgtctgaactcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcaaaaccaacctttttttgg 2647630  T
Q  217 gttcgagttcggctcgtttcaaattcacga 246  Q
    | ||||||||||||||||| || |||||||    
T  2647629 gctcgagttcggctcgtttaaagttcacga 2647600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 143 - 248
Target Start/End: Original strand, 12139403 - 12139508
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattc 242  Q
    |||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||| || || ||||||||||||||||| || |||    
T  12139403 tgagctcggttcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactattttttcagctcgagttcggctcgtttaaagttc 12139502  T
Q  243 acgaac 248  Q
    ||||||    
T  12139503 acgaac 12139508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 148 - 250
Target Start/End: Original strand, 41958589 - 41958691
Alignment:
Q  148 tcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaa 247  Q
    |||| |||||||||||| |||||||||||||||||||||| ||||||||||| | ||||| ||| || || ||||||||||||||||| || ||||||||    
T  41958589 tcggttcgactcgataaaaattggttcggctcgaaactcggctcgagttcgacacgaactattttttcagctcgagttcggctcgtttaaagttcacgaa 41958688  T
Q  248 cag 250  Q
    |||    
T  41958689 cag 41958691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 27633179 - 27633286
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattc 242  Q
    |||| ||||||||||| |||||||||||||||||||||||||||| ||| ||||| | |  |||| ||| || || ||||||||||||||||| || |||    
T  27633179 tgagctcggctcgacttgataagaattggttcggctcgaaactcggctcaagttcaacacaaactattttttcagctcgagttcggctcgtttaaagttc 27633278  T
Q  243 acgaacag 250  Q
    ||||||||    
T  27633279 acgaacag 27633286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 117 - 279
Target Start/End: Complemental strand, 44741425 - 44741263
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    |||||| || ||||| ||||  ||| |||| ||||||||||| |||||||||| | ||||||||||||||||||||||||||| | ||||| ||| || |    
T  44741425 atgagttgagttgaaccgaacctgtctgagctcggctcgacttgataagaatttgctcggctcgaaactcgactcgagttcgacacgaactcttttttca 44741326  T
Q  217 gttcgagttcggctcgtttcaaattcacgaacagctcgactcgactcattagggtcaactcgt 279  Q
    | || | |||| ||||||| || ||||||||||| |||  | ||||| ||||| |||| ||||    
T  44741325 gctcaaattcgactcgtttaaagttcacgaacagttcggtttgactcgttaggttcaattcgt 44741263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 156 - 248
Target Start/End: Complemental strand, 3409939 - 3409847
Alignment:
Q  156 actcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaac 248  Q
    |||||||||||||| | |||||| |||||||||||||||||||||| |||| |||| || |  ||||||||||||||||| || |||||||||    
T  3409939 actcgataagaattagctcggcttgaaactcgactcgagttcgatacgaaccttttttttaactcgagttcggctcgtttaaagttcacgaac 3409847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 29804312 - 29804399
Alignment:
Q  155 gactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaa-ctttttgttaagttcgagttcggctcgtttcaaattc 242  Q
    |||||||||| |||||||||||||||||||||||||| ||||||| ||||| |||||| ||||  ||||||||||||||||| ||||||    
T  29804312 gactcgataaaaattggttcggctcgaaactcgactcaagttcgaaatgaacctttttcttaa-ctcgagttcggctcgtttaaaattc 29804399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 40675210 - 40675265
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaac 206  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40675210 gctcgattcgataagaattggttcggctcgaaactcgactcgagttcgatacgaac 40675265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 155 - 277
Target Start/End: Original strand, 40458381 - 40458503
Alignment:
Q  155 gactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacagctcg 254  Q
    ||||| ||||||| || |||||||| ||||||||||||||||||| | |||| |||| || |  ||||||||||||||||| |||||||||| ||  |||    
T  40458381 gactcaataagaaatgattcggctcaaaactcgactcgagttcgaaacgaacatttttttcaactcgagttcggctcgtttaaaattcacgagcaattcg 40458480  T
Q  255 actcgactcattagggtcaactc 277  Q
      ||||||| ||||| |||||||    
T  40458481 gttcgactcgttaggttcaactc 40458503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 143 - 260
Target Start/End: Original strand, 39801158 - 39801275
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattc 242  Q
    |||| |||||||||||||| ||||||| |||| |||||||| ||| ||||||||||| | ||||| ||| || || |||||||| |||||||| | ||||    
T  39801158 tgagctcggctcgactcgagaagaattagttcagctcgaaattcggctcgagttcgacacgaactcttttttcagctcgagttcagctcgtttaagattc 39801257  T
Q  243 acgaacagctcgactcga 260  Q
    || ||||| ||| |||||    
T  39801258 acaaacagttcggctcga 39801275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 117 - 249
Target Start/End: Original strand, 26435778 - 26435910
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | ||| ||||| ||| |||| ||||||||| ||||||||||||||||||| ||||||||||  |||||||||| | ||| | ||| || |    
T  26435778 atgagtcgagtcgaaccgaatctgtctgagctcggctcgattcgataagaattggttcggttcgaaactcggttcgagttcgacacgaaatattttttca 26435877  T
Q  217 gttcgagttcggctcgtttcaaattcacgaaca 249  Q
      ||||||||| || |||| || ||||||||||    
T  26435878 actcgagttcgacttgtttaaagttcacgaaca 26435910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 18667148 - 18667218
Alignment:
Q  129 gaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcga 199  Q
    |||||||| | || |||| | ||||||||||||||||||| | |||||||||||||| |||||||||||||    
T  18667148 gaatcgaactcgtctgagcttggctcgactcgataagaatagcttcggctcgaaacttgactcgagttcga 18667218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 250
Target Start/End: Original strand, 11027298 - 11027431
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | |||||||| |||| |||||||| ||| ||||  |||||||| |||||| ||||| ||||  ||||||| || | ||||||||| |  |    
T  11027298 atgagtcgagtcgaatcgaacttgtctgagttcgactcaactcattaagaatttgttcggttcgaacctcggatcgagtttgacacgaactttttttcca 11027397  T
Q  217 gttcgagttcggctcgtttcaaattcacgaacag 250  Q
      || |||||||||||||| || |||||||||||    
T  11027398 actcaagttcggctcgtttaaagttcacgaacag 11027431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 181
Target Start/End: Original strand, 33830901 - 33830965
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcga 181  Q
    ||||||||| | ||| ||||  ||| |||| ||||||||||||||||||||||||||||||||||    
T  33830901 atgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcga 33830965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 33164681 - 33164617
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcga 181  Q
    ||||||||| | ||| ||||| ||| ||| || ||||||||||||||| ||||||||||||||||    
T  33164681 atgagtcgagtcgaaccgaatctgtctgaatttggctcgactcgataaaaattggttcggctcga 33164617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 29478090 - 29478145
Alignment:
Q  153 tcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactt 208  Q
    ||||||| |||||| |||||||||||| |||||||||| || ||||||| ||||||    
T  29478090 tcgactcaataagatttggttcggctcaaaactcgacttgatttcgatacgaactt 29478145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 187
Target Start/End: Original strand, 35380396 - 35380435
Alignment:
Q  148 tcggctcgactcgataagaattggttcggctcgaaactcg 187  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  35380396 tcggctcgactcgataagaattagatcggctcgaaactcg 35380435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 268
Target Start/End: Complemental strand, 20204427 - 20204366
Alignment:
Q  207 tttttgttaagttcgagttcggctcgtttcaaattcacgaacagctcgactcgactcattag 268  Q
    ||||| || |||||||||||||||||||| || ||||||||||| | |  ||||||||||||    
T  20204427 ttttttttcagttcgagttcggctcgtttaaagttcacgaacagtttggttcgactcattag 20204366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 33830961 - 33831021
Alignment:
Q  189 ctcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaaca 249  Q
    ||||||||||| | ||||| ||| || || ||||||||||||||||| || ||||||||||    
T  33830961 ctcgagttcgacacgaactattttttcagctcgagttcggctcgtttaaagttcacgaaca 33831021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 9e-25; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 148 - 246
Target Start/End: Original strand, 43966924 - 43967022
Alignment:
Q  148 tcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacga 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| ||||| ||  | ||||||||||||||||| || |||||||    
T  43966924 tcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcaaaacgaatttttttttgggctcgagttcggctcgtttaaagttcacga 43967022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 117 - 248
Target Start/End: Complemental strand, 9413393 - 9413262
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | |||  ||| |||| |||| ||| |||||||||||||||| |||||||||||||||||||||| |||||||| | |||| |||| || |    
T  9413393 atgagtcgagtcgaactgaacttgtctgagctcgactcgactcgataagaaatggttcggctcgaaactcgacttgagttcgacacgaacctttttttta 9413294  T
Q  217 gttcgagttcggctcgtttcaaattcacgaac 248  Q
    | || |||||||||| ||| || |||||||||    
T  9413293 gctcaagttcggctcatttaaagttcacgaac 9413262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 11161115 - 11161222
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattc 242  Q
    |||| ||||||| ||||||||||||||||||||||||||| |||| ||||||||||  | ||||| ||| || || |||||||| |||||||| || |||    
T  11161115 tgagctcggctccactcgataagaattggttcggctcgaacctcggctcgagttcgccacgaactattttttcagctcgagttcagctcgtttaaagttc 11161214  T
Q  243 acgaacag 250  Q
    ||||||||    
T  11161215 acgaacag 11161222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 129 - 250
Target Start/End: Original strand, 22563281 - 22563402
Alignment:
Q  129 gaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcgg 228  Q
    ||||||||| ||| |||| ||||||| ||||||||||| || | ||||||||||||||||||||||||| | | ||||| ||| || || |||||||||     
T  22563281 gaatcgaatctgtctgagctcggctcaactcgataagattttgctcggctcgaaactcgactcgagttcaacacgaactcttttttcagctcgagttcga 22563380  T
Q  229 ctcgtttcaaattcacgaacag 250  Q
    ||||||| |  |||||||||||    
T  22563381 ctcgtttaaggttcacgaacag 22563402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 17865780 - 17865721
Alignment:
Q  140 gtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcga 199  Q
    |||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  17865780 gtttgagtccggctcaactcgataagaattggttcagctcgaaactcgactcgagttcga 17865721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 22930943 - 22930896
Alignment:
Q  152 ctcgactcgataagaattggttcggctcgaaactcgactcgagttcga 199  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  22930943 ctcgactcgataagaattggttcggctcgaaactcggctcgagttcga 22930896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 117 - 235
Target Start/End: Original strand, 32740290 - 32740408
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||||| || |||||||| | ||||||||  ||||||| ||||||||| |||| |||||||| || |||||| ||| ||| ||||||||| ||||    
T  32740290 atgagtcgaatcgagtcgaatttatctgagttcgattcgactcaataagaattagttcagctcgaaattcaactcgaattcaatacgaacttttttttaa 32740389  T
Q  217 gttcgagttcggctcgttt 235  Q
     ||| |||| || ||||||    
T  32740390 attcaagtttggttcgttt 32740408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 25731949 - 25731900
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagttcgat 200  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  25731949 gctcgactcgataagaattggttcggctcgaaagtcgactcaagttcgat 25731900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 152 - 269
Target Start/End: Original strand, 12377767 - 12377884
Alignment:
Q  152 ctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaattcacgaacagc 251  Q
    ||||| |||||||||||  |||| |||||||||||||||||||||||| | ||||| ||| || |  ||||||||  ||||||| || ||||| |||| |    
T  12377767 ctcgattcgataagaatgtgttcagctcgaaactcgactcgagttcgaaacgaactatttttttaactcgagttcatctcgtttaaagttcacaaacaac 12377866  T
Q  252 tcgactcgactcattagg 269  Q
    |||  || ||||||||||    
T  12377867 tcggttccactcattagg 12377884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 248
Target Start/End: Original strand, 39477444 - 39477559
Alignment:
Q  132 tcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctc 231  Q
    |||||| ||| |||| ||| ||||||||||||||||||||||||  |||||||| | ||||| ||||| | |||| |||| |  || ||||||||||||     
T  39477444 tcgaatctgtctgagctcgactcgactcgataagaattggttcgattcgaaacttggctcgaattcgaaacgaacatttt-tctagctcgagttcggctt 39477542  T
Q  232 gtttcaaattcacgaac 248  Q
    |||| || |||||||||    
T  39477543 gtttaaagttcacgaac 39477559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 13784250 - 13784295
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagtt 196  Q
    |||||||||||||| |||||||||||||| ||||| ||||||||||    
T  13784250 gctcgactcgataaaaattggttcggctcaaaacttgactcgagtt 13784295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 141 - 247
Target Start/End: Complemental strand, 32554198 - 32554092
Alignment:
Q  141 tttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaagttcgagttcggctcgtttcaaat 240  Q
    |||||| ||| |||||||||||||| |||| ||    ||||||||| ||||||||| || ||||||| |||  |||||| || |||| ||||||| || |    
T  32554198 tttgagctcgactcgactcgataaggattgatttaattcgaaactcaactcgagtttgaaatgaactcttttataagtttgaattcgtctcgtttaaatt 32554099  T
Q  241 tcacgaa 247  Q
    |||||||    
T  32554098 tcacgaa 32554092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10292291 - 10292339
Alignment:
Q  1 tatgtaggagtttatggttttctttagtctggtactgttgtggaagatg 49  Q
    ||||||||| |||||||||||||| |||||| ||| ||||| |||||||    
T  10292291 tatgtaggaatttatggttttcttcagtctgataccgttgtagaagatg 10292339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 15212000 - 15211940
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaacttttt 211  Q
    ||||||||| |||||| ||||||  |||||||||||| |||||||||| ||  ||||||||    
T  15212000 gctcgactccataagatttggtttagctcgaaactcggctcgagttcgttacaaacttttt 15211940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 120 - 211
Target Start/End: Original strand, 26507 - 26598
Alignment:
Q  120 agtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaacttttt 211  Q
    |||||| ||||||||||  |||||||| ||| ||||||||||||||||||||||| |||||||| ||||||||||||||| | |||||||||    
T  26507 agtcgagttgaatcgaacctgtttgagctcgactcgactcgataagaattggttcagctcgaaattcgactcgagttcgaaacgaacttttt 26598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0444 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 151 - 278
Target Start/End: Complemental strand, 1508 - 1381
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgt-taagttcgagttcggctcgtttcaaattcacgaaca 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || | |||| |||| | ||| || ||||||||||||||| || ||||||||||    
T  1508 gctcgactcgataagaattggttcggctcgaaactcgactcgagtttgaaacgaaccttttctctaactt-gagttcggctcgtttaaagttcacgaaca 1410  T
Q  250 gctcgactcgactcattagggtcaactcg 278  Q
     || |  ||| ||| ||||| ||||||||    
T  1409 acttggttcggctcgttaggttcaactcg 1381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0658 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 6496 - 6440
Alignment:
Q  143 tgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcga 199  Q
    |||| ||| ||||||||||||||||||||||||| | |||||||| |||||||||||    
T  6496 tgagctcgactcgactcgataagaattggttcgggttgaaactcggctcgagttcga 6440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0746 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0746
Description:

Target: scaffold0746; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 197
Target Start/End: Complemental strand, 5381 - 5335
Alignment:
Q  151 gctcgactcgataagaattggttcggctcgaaactcgactcgagttc 197  Q
    |||||| ||||||||||||||||||| |||||| |||||||||||||    
T  5381 gctcgattcgataagaattggttcggttcgaaagtcgactcgagttc 5335  T

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Target: scaffold0043 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 247
Target Start/End: Original strand, 16503 - 16632
Alignment:
Q  117 atgagtcgaattgaatcgaatttgtttgagttcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgatatgaactttttgttaa 216  Q
    ||||||||| | ||||||||  ||| |||| ||| ||| |||| | || |||  |||||||||||||||||||||||||| || |  ||| |||| |||     
T  16503 atgagtcgagtcgaatcgaacctgtctgagctcgactcaactcaacaaaaatatgttcggctcgaaactcgactcgagtttgaaacaaacctttt-ttag 16601  T
Q  217 gttcgagttcggctcgtttcaaattcacgaa 247  Q
    | || |||| ||||||||| |||||||||||    
T  16602 gctcaagtttggctcgtttaaaattcacgaa 16632  T

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Target: scaffold0025 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 4745 - 4778
Alignment:
Q  173 tcggctcgaaactcgactcgagttcgatatgaac 206  Q
    ||||||||||||||||||||||||||||| ||||    
T  4745 tcggctcgaaactcgactcgagttcgatacgaac 4778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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