View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14963_low_7 (Length: 353)
Name: NF14963_low_7
Description: NF14963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14963_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 32272656 - 32272992
Alignment:
| Q |
1 |
ttcgactctgagtcctcgcttgttcaagcaccacttgattttgagtctgcatctgctgactcaattgttgtattagtgtcaccatttcaggggtcatctc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32272656 |
ttcgactctgagtcctcgcttgttcaagctccacttgattttgagtctgcatctgctgactcaattgttgtattagtgtcaccatttcaggggtcatctc |
32272755 |
T |
|
| Q |
101 |
cacgttacgagaaccgccttctccatcaatagatcgttcataaatacatctattgtgtatcaagttggaggacatggtttcagcaccacaatatttgtca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32272756 |
cacgttacgagaaccgccttctccatcaatagatcgttcataaatacatctattgtgtatcaagttggaggacatggtttcagcaccacaatatttgtca |
32272855 |
T |
|
| Q |
201 |
cttcttccatgttcgactgtttccttccaaatggtttgtgtagtagaatgatcaagtaaatgctttgtacccgtcagagatgagccatctgattgagata |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32272856 |
cttctttcatgttcgactgtttccttccaaatggtttgtgtagtagaatgatcaagtaaatgctttgtacccgttagagatgagccatctgattgagata |
32272955 |
T |
|
| Q |
301 |
atacctctttagttctctcatcaaacctcttctatat |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32272956 |
atacctctttagttctctcatcaaacctcttctatat |
32272992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 4 - 312
Target Start/End: Original strand, 24551564 - 24551871
Alignment:
| Q |
4 |
gactctgagtcctcgcttgttcaagcaccacttgattttgagtctgcatctgctgactcaattgttgtattagtgtcaccatttcaggggtcatctccac |
103 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||| | || ||||||||||| | ||||||||| |
|
|
| T |
24551564 |
gactctgagtcctcgcttgttcaagctccacttgattttgagattgcatctgttgactcaattgttgtatcattgcaaccatttcaggtg-catctccac |
24551662 |
T |
|
| Q |
104 |
gttacgagaaccgccttctccatcaatagatcgttcataaatacatctattgtgtatcaagttggaggacatggtttcagcaccacaatatttgtcactt |
203 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||| ||||| | |||||||| ||||||||| |||| |
|
|
| T |
24551663 |
attacgagagccgccttctccatcaatcgatcgttcataaatacatctattgtgtaccaaattggaggccatggatccagcaccataatatttgtaactt |
24551762 |
T |
|
| Q |
204 |
cttccatgttcgactgtttccttccaaatggtttgtgtagtagaatgatcaagtaaatgctttgtacccgtcagagatgagccatctgattgagataata |
303 |
Q |
| |
|
||||| || ||||| ||||||||||||||||||||| |||||||||||||||||| || ||||||| || ||||||||||||| || ||||||||| |
|
|
| T |
24551763 |
tttccacgtccgactatttccttccaaatggtttgtgaggtagaatgatcaagtaaacgcattgtacctgttggagatgagccatcagacggagataata |
24551862 |
T |
|
| Q |
304 |
cctctttag |
312 |
Q |
| |
|
| ||||||| |
|
|
| T |
24551863 |
catctttag |
24551871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 11 - 312
Target Start/End: Complemental strand, 13574287 - 13573986
Alignment:
| Q |
11 |
agtcctcgcttgttcaagcaccacttgattttgagtctgcatctgctgactcaattgttgtattagtgtcaccatttcaggggtcatctccacgttacga |
110 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||| |||| |||||||||||| ||||||||||| |||||| |
|
|
| T |
13574287 |
agtcctcgcttgttcaagctccacttgattttgagattgcatctgttgactcaattgttgtatcagtgccaccatttcaggtgtcatctccacattacga |
13574188 |
T |
|
| Q |
111 |
gaaccgccttctccatcaatagatcgttcataaatacatctattgtgtatcaagttggaggacatggtttcagcaccacaatatttgtcacttcttccat |
210 |
Q |
| |
|
|| ||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||| | ||||||| ||||||||| |||| ||||| |
|
|
| T |
13574187 |
gagccgccgtctccatcaatcgatcgttcataaatacatctattgtgtaccaagttggaggccatggatccagcaccttaatatttgtaactttttccac |
13574088 |
T |
|
| Q |
211 |
gttcgactgtttccttccaaatggtttgtgtagtagaatgatcaagtaaatgctttgtacccgtcagagatgagccatctgattgagataatacctcttt |
310 |
Q |
| |
|
|| ||||| ||||||||||||||||||||| |||||||||||||||||| || || ||||||| ||||||||||||| || ||||||||||||||||| |
|
|
| T |
13574087 |
gtccgactttttccttccaaatggtttgtgaggtagaatgatcaagtaaacgcattatacccgttggagatgagccatcagaatgagataatacctcttt |
13573988 |
T |
|
| Q |
311 |
ag |
312 |
Q |
| |
|
|| |
|
|
| T |
13573987 |
ag |
13573986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 4 - 312
Target Start/End: Complemental strand, 13900198 - 13899890
Alignment:
| Q |
4 |
gactctgagtcctcgcttgttcaagcaccacttgattttgagtctgcatctgctgactcaattgttgtattagtgtcaccatttcaggggtcatctccac |
103 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| ||||| || ||||||||||||||||| | || |||||||||||| ||||||||||| |
|
|
| T |
13900198 |
gactctgagtcctcgcttgttcaagctccacttgattttgagattgcatatgttgactcaattgttgtatcattgccaccatttcaggtgtcatctccac |
13900099 |
T |
|
| Q |
104 |
gttacgagaaccgccttctccatcaatagatcgttcataaatacatctattgtgtatcaagttggaggacatggtttcagcaccacaatatttgtcactt |
203 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||| ||||| | |||||||| ||||||||| |||| |
|
|
| T |
13900098 |
attacgagagccgccttctccatcaatcgatcgttcataaatacatctattgtttagcaagttggaggccatggatccagcaccataatatttgtaactt |
13899999 |
T |
|
| Q |
204 |
cttccatgttcgactgtttccttccaaatggtttgtgtagtagaatgatcaagtaaatgctttgtacccgtcagagatgagccatctgattgagataata |
303 |
Q |
| |
|
||||| || ||||| ||||||||||||||||||||| |||||||||||||||||| || |||||| || ||||||||||||| | ||||||||| |
|
|
| T |
13899998 |
tttccacgtccgactatttccttccaaatggtttgtgaggtagaatgatcaagtaaacgcattgtacttgttggagatgagccatcaaacggagataata |
13899899 |
T |
|
| Q |
304 |
cctctttag |
312 |
Q |
| |
|
||||||||| |
|
|
| T |
13899898 |
cctctttag |
13899890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 4 - 312
Target Start/End: Complemental strand, 19139080 - 19138772
Alignment:
| Q |
4 |
gactctgagtcctcgcttgttcaagcaccacttgattttgagtctgcatctgctgactcaattgttgtattagtgtcaccatttcaggggtcatctccac |
103 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||| || ||||| | || |||||||||||| ||||||||||| |
|
|
| T |
19139080 |
gactctgagtcctcgcttgttcaagctccacttgattttgagatttcatctgctgactcatatgctgtatcattgccaccatttcaggtgtcatctccac |
19138981 |
T |
|
| Q |
104 |
gttacgagaaccgccttctccatcaatagatcgttcataaatacatctattgtgtatcaagttggaggacatggtttcagcaccacaatatttgtcactt |
203 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||| | |||||||| ||||||||| |||| |
|
|
| T |
19138980 |
attacgagagccgccttctccatcaatcgatcgttcataaatacatctattgtgtaccaagttggaggccatggatccagcaccataatatttgtaactt |
19138881 |
T |
|
| Q |
204 |
cttccatgttcgactgtttccttccaaatggtttgtgtagtagaatgatcaagtaaatgctttgtacccgtcagagatgagccatctgattgagataata |
303 |
Q |
| |
|
||||| | ||||| ||||||||||||||||||||| |||||||||||||||||| || ||||||| || ||||||||||||| || ||||||||| |
|
|
| T |
19138880 |
tttccacatccgactatttccttccaaatggtttgtgaggtagaatgatcaagtaaacgcattgtacctgttggagatgagccatcagacggagataata |
19138781 |
T |
|
| Q |
304 |
cctctttag |
312 |
Q |
| |
|
||||||||| |
|
|
| T |
19138780 |
cctctttag |
19138772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 8 - 312
Target Start/End: Complemental strand, 23965194 - 23964890
Alignment:
| Q |
8 |
ctgagtcctcgcttgttcaagcaccacttgattttgagtctgcatctgctgactcaattgttgtattagtgtcaccatttcaggggtcatctccacgtta |
107 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||| |||||||| |||||| |||||||||| |||| |||||||||||| ||||||||| | ||| |
|
|
| T |
23965194 |
ctgagtcctcgcttgttcaagctccacttgtttttgagattgcatctgttgactcgattgttgtatcagtgccaccatttcaggtgtcatctccgcatta |
23965095 |
T |
|
| Q |
108 |
cgagaaccgccttctccatcaatagatcgttcataaatacatctattgtgtatcaagttggaggacatggtttcagcaccacaatatttgtcacttcttc |
207 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||| | |||||||| ||||||||| |||| ||| |
|
|
| T |
23965094 |
cgagagccgccatctccatcaatcgatcgttcataaatacatctattgtgtaccaagttggaggccatggatccagcaccataatatttgtaactttttc |
23964995 |
T |
|
| Q |
208 |
catgttcgactgtttccttccaaatggtttgtgtagtagaatgatcaagtaaatgctttgtacccgtcagagatgagccatctgattgagataatacctc |
307 |
Q |
| |
|
|| || |||| ||||||||||||||||||||| |||||||| ||||||||| || |||||||||| ||||||||||||| || ||||||||||||| |
|
|
| T |
23964994 |
cacgtcagactatttccttccaaatggtttgtgaggtagaatggtcaagtaaacgcattgtacccgttggagatgagccatcagacggagataatacctc |
23964895 |
T |
|
| Q |
308 |
tttag |
312 |
Q |
| |
|
||||| |
|
|
| T |
23964894 |
tttag |
23964890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University