View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14964_high_1 (Length: 813)

Name: NF14964_high_1
Description: NF14964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14964_high_1
NF14964_high_1
[»] chr1 (2 HSPs)
chr1 (19-802)||(27656197-27656980)
chr1 (43-126)||(28351315-28351398)
[»] chr7 (7 HSPs)
chr7 (442-584)||(41309954-41310096)
chr7 (442-559)||(41324645-41324762)
chr7 (220-283)||(41309780-41309843)
chr7 (71-131)||(9895276-9895336)
chr7 (726-772)||(41310313-41310359)
chr7 (220-287)||(41324478-41324545)
chr7 (71-125)||(38652447-38652501)
[»] chr3 (5 HSPs)
chr3 (42-138)||(20532502-20532598)
chr3 (135-204)||(16983938-16984007)
chr3 (134-203)||(20532624-20532692)
chr3 (42-103)||(47844140-47844201)
chr3 (87-138)||(21014360-21014411)
[»] chr5 (1 HSPs)
chr5 (42-138)||(18148205-18148301)
[»] chr2 (5 HSPs)
chr2 (82-138)||(44472935-44472991)
chr2 (46-125)||(7708836-7708915)
chr2 (68-113)||(26317580-26317625)
chr2 (72-133)||(37444722-37444783)
chr2 (94-127)||(17765481-17765514)
[»] chr6 (6 HSPs)
chr6 (158-205)||(3731346-3731393)
chr6 (137-206)||(33184916-33184984)
chr6 (42-138)||(33185013-33185109)
chr6 (147-204)||(10919711-10919768)
chr6 (94-131)||(15959333-15959370)
chr6 (92-126)||(10587381-10587415)
[»] chr8 (2 HSPs)
chr8 (73-138)||(45439370-45439434)
chr8 (72-106)||(9594695-9594729)
[»] chr4 (1 HSPs)
chr4 (72-125)||(2187028-2187081)


Alignment Details
Target: chr1 (Bit Score: 627; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 19 - 802
Target Start/End: Complemental strand, 27656980 - 27656197
Alignment:
19 ggtgaaacatagaggtaaaggtttttgtggtggctgaaagctagcaagattaattttgttttcggtactcatttgtggtggtcgagcccacttttatgtt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
27656980 ggtgaaacatagaggtaaaggtttttgtggtggctgaaagctagcaagattaattttgttttcagtactcatttgtggtggtcgagcccacttttatttt 27656881  T
119 tgggcatcgactagctttttcgtaattgctttgtcacgccttgtgctgaggcgattgcgttgtcagtgttaatataattcattttggcctaatnnnnnnn 218  Q
    || | |||| ||||||||||||| |||| |||| |||| ||||||||||| |||||| | |||||||||||||||||||||||||||||| ||           
27656880 tgaggatcggctagctttttcgtgattgttttggcacgtcttgtgctgagacgattgtgctgtcagtgttaatataattcattttggcctgataaaaaaa 27656781  T
219 ngtttaccttgcaaaagtaaaccccagaagaaaagttttaatgtcctaaaaattatcttcttcacagcaaccttaactttgggaattctctgcattgtta 318  Q
     |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27656780 agtttaccttgcaaaagtaaaccccagaagagaagctttaatgtcctaaaaattatcttcttcacagcaaccttaactttgggaattctctgcattgtta 27656681  T
319 cttataggtcataatcaatggactatatagatatacatgaactagaatctagaaataatcatacaggaatgaggatatagctctttgttaatcaagtgac 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||  ||||||||||||||||||||||||| |||||||    
27656680 cttataggtcataatcaatggactatatagatatacatgaactagaaactagaaacaatcatacaaaaatgaggatatagctctttgttaattaagtgac 27656581  T
419 attgcattacatgcatagtataatacctttaatgcaagagctatagcaactccaacaatgaaaaggaaaaaaggcataacgaaatcagccaatgtacatc 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27656580 attgcattacatgcatagtataatacctttaatgcaagagctatagcaactccaacaatgaaaaggaaaaaaggcataacgaaatcagccaatgtacatc 27656481  T
519 cattccatggagagtgatcaatttgaggataagctccaccaccatcatccaccaatatcatcaactgtaaatatttttagatcgtcaattaatatcgatt 618  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
27656480 cattccatggagagtgatcaattcgaggataagctccaccaccatcatccaccaatatcatcaactgtaaatattgttagatcgtcaattaatatcgatt 27656381  T
619 gtcagataattaaaaatattttattatcattacgactatttctaaagttacacatgtgatttgttatgatttattgatagcgttaaaagtatcttagaaa 718  Q
    ||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
27656380 gtcagataattaaaaatattttattttcattatgactacttctaaagttacacatatgatttgttatgatttattgatagcgttaaaagcatcttagaaa 27656281  T
719 agtatgtactaaccacgattgtgaggcccctaaatgcatcaagagttgcaaccctacnnnnnnngtgcttaacctcttgctcct 802  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||| |||||||||||    
27656280 agtatgtactaaccacgattgtgaggcccctaaatgcatcaagagttgcaaccctactttttttgtgcttaatctcttgctcct 27656197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 28351398 - 28351315
Alignment:
43 ttgtggtggctgaaagctagcaagattaattttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatc 126  Q
    ||||||||| |||||||||| ||   ||  ||| ||||| |||||| |||||||||||||||||||||| | ||||| ||||||    
28351398 ttgtggtggttgaaagctagtaacgctacctttattttcagtactcgtttgtggtggtcgagcccacttatgtgttttggcatc 28351315  T

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Target: chr7 (Bit Score: 87; Significance: 3e-41; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 442 - 584
Target Start/End: Original strand, 41309954 - 41310096
Alignment:
442 tacctttaatgcaagagctatagcaactccaacaatgaaaaggaaaaaaggcataacgaaatcagccaatgtacatccattccatggagagtgatcaatt 541  Q
    ||||||||||||||||||||| || || ||||| |||||||| || ||||||||||| ||||||||||| |||||||||||||||||||||||||||||     
41309954 tacctttaatgcaagagctatggccacaccaacgatgaaaagaaagaaaggcataacaaaatcagccaaagtacatccattccatggagagtgatcaatg 41310053  T
542 tgaggataagctccaccaccatcatccaccaatatcatcaact 584  Q
     | | ||||||||||||| |||| |||||||||||||||||||    
41310054 cgtgaataagctccaccagcatcgtccaccaatatcatcaact 41310096  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 442 - 559
Target Start/End: Original strand, 41324645 - 41324762
Alignment:
442 tacctttaatgcaagagctatagcaactccaacaatgaaaaggaaaaaaggcataacgaaatcagccaatgtacatccattccatggagagtgatcaatt 541  Q
    ||||||||||||||| ||||| ||||| |||||||||||||| || |||||||| || ||||||||||| |||||||||| ||| || |  ||||||||     
41324645 tacctttaatgcaagggctatggcaacaccaacaatgaaaagaaagaaaggcattacaaaatcagccaaagtacatccatcccacggggcatgatcaatg 41324744  T
542 tgaggataagctccacca 559  Q
     | |||||||||||||||    
41324745 cgtggataagctccacca 41324762  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 220 - 283
Target Start/End: Original strand, 41309780 - 41309843
Alignment:
220 gtttaccttgcaaaagtaaaccccagaagaaaagttttaatgtcctaaaaattatcttcttcac 283  Q
    |||||||||||||||||| |||||| |||| |||||| |||||||| | |||||||||||||||    
41309780 gtttaccttgcaaaagtataccccaaaagagaagtttcaatgtcctgagaattatcttcttcac 41309843  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 9895336 - 9895276
Alignment:
71 attttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgacta 131  Q
    |||||||||| |||| || | |||||||| ||||||| |||||||||||||||||||||||    
9895336 attttgtttttggtattcgtatgtggtggacgagcccgcttttatgtttgggcatcgacta 9895276  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 726 - 772
Target Start/End: Original strand, 41310313 - 41310359
Alignment:
726 actaaccacgattgtgaggcccctaaatgcatcaagagttgcaaccc 772  Q
    ||||||||| || ||||||||||||||||||||||| ||||||||||    
41310313 actaaccacaatggtgaggcccctaaatgcatcaagtgttgcaaccc 41310359  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 41324478 - 41324545
Alignment:
220 gtttaccttgcaaaagtaaaccccagaagaaaagttttaatgtcctaaaaattatcttcttcacagca 287  Q
    ||||||||||||| |||| |||||| |||| ||| || ||||||||||  |||||||| |||||||||    
41324478 gtttaccttgcaatagtataccccaaaagagaagcttcaatgtcctaagtattatctttttcacagca 41324545  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 38652447 - 38652501
Alignment:
71 attttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcat 125  Q
    ||||| |||| || |||||| |||||||||||||||| ||| |||||||||||||    
38652447 attttatttttgggactcatatgtggtggtcgagcccgcttgtatgtttgggcat 38652501  T

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Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 20532502 - 20532598
Alignment:
42 tttgtggtggctgaaagctagcaagattaattttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgactagcttttt 138  Q
    |||||||||||||||||| || |||| |   ||||||||||| ||||||||||||||||||||||||||| | ||||||||||||| |||| |||||    
20532502 tttgtggtggctgaaagccagtaagactgcctttgttttcggcactcatttgtggtggtcgagcccacttatgtgtttgggcatcggctagattttt 20532598  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 16984007 - 16983938
Alignment:
135 ttttcgtaattgctttgtcacgccttgtgctgaggcgattgcgttgtcagtgttaatataattcattttg 204  Q
    ||||||| |||| |||| ||||||||||||||| ||||||||  ||||||||||||||||||||||||||    
16984007 ttttcgtgattgttttggcacgccttgtgctgaagcgattgcactgtcagtgttaatataattcattttg 16983938  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 20532624 - 20532692
Alignment:
134 tttttcgtaattgctttgtcacgccttgtgctgaggcgattgcgttgtcagtgttaatataattcatttt 203  Q
    |||||||| ||| ||||  |||||||||| ||| ||||||||||||||||||||||||||||||||||||    
20532624 tttttcgtgatttctttcgcacgccttgtactg-ggcgattgcgttgtcagtgttaatataattcatttt 20532692  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 47844140 - 47844201
Alignment:
42 tttgtggtggctgaaagctagcaagattaattttgttttcggtactcatttgtggtggtcga 103  Q
    |||||||||||| |||||||| |||   |||||| ||||||||| |||||||||||||||||    
47844140 tttgtggtggctaaaagctagaaaggccaattttattttcggtattcatttgtggtggtcga 47844201  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 21014411 - 21014360
Alignment:
87 tcatttgtggtggtcgagcccacttttatgtttgggcatcgactagcttttt 138  Q
    |||||||||||||| |||||||||| | ||||||||||||| ||| ||||||    
21014411 tcatttgtggtggttgagcccacttatgtgtttgggcatcgtctaacttttt 21014360  T

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Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 18148205 - 18148301
Alignment:
42 tttgtggtggctgaaagctagcaagattaattttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgactagcttttt 138  Q
    |||||||||| |||||||||| ||   ||  ||||||||||||||||||||||||||||| ||| ||||| | |||||||| |||| ||||||||||    
18148205 tttgtggtggttgaaagctagtaacgctacctttgttttcggtactcatttgtggtggtcaagctcacttatgtgtttgggtatcggctagcttttt 18148301  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 44472991 - 44472935
Alignment:
82 ggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgactagcttttt 138  Q
    |||||||||| ||||||||||||||| ||||| |||||||||||||||||| |||||    
44472991 ggtactcattcgtggtggtcgagccctcttttgtgtttgggcatcgactagtttttt 44472935  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 125
Target Start/End: Complemental strand, 7708915 - 7708836
Alignment:
46 tggtggctgaaagctagcaagattaattttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcat 125  Q
    |||||||| |||||||  ||  ||||||||||||| |||| |||| |||||||||||||||| || || |||||||||||    
7708915 tggtggcttaaagctaagaaagttaattttgtttttggtattcatatgtggtggtcgagcccgctcttgtgtttgggcat 7708836  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 26317580 - 26317625
Alignment:
68 ttaattttgttttcggtactcatttgtggtggtcgagcccactttt 113  Q
    ||||||||||||| | || |||||||||||||||||||||||||||    
26317580 ttaattttgtttttgctattcatttgtggtggtcgagcccactttt 26317625  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 133
Target Start/End: Complemental strand, 37444783 - 37444722
Alignment:
72 ttttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgactagc 133  Q
    |||| |||| || ||||||||||| ||||||||||| || || |||||||||||||||||||    
37444783 ttttatttttggcactcatttgtgatggtcgagccccctgttgtgtttgggcatcgactagc 37444722  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 127
Target Start/End: Original strand, 17765481 - 17765514
Alignment:
94 tggtggtcgagcccacttttatgtttgggcatcg 127  Q
    |||||||||||||||||||||||| |||||||||    
17765481 tggtggtcgagcccacttttatgtatgggcatcg 17765514  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 3731393 - 3731346
Alignment:
158 cttgtgctgaggcgattgcgttgtcagtgttaatataattcattttgg 205  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||    
3731393 cttgtgctgaagcaattgcgttgtcagtgttaatataattcattttgg 3731346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 33184984 - 33184916
Alignment:
137 ttcgtaattgctttgtcacgccttgtgctgaggcgattgcgttgtcagtgttaatataattcattttggc 206  Q
    ||||| |||| |||| ||||||||||||||| || |||||| ||||||||||||| ||||||||||||||    
33184984 ttcgtgattgttttggcacgccttgtgctgaagcaattgcgatgtcagtgttaat-taattcattttggc 33184916  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 138
Target Start/End: Complemental strand, 33185109 - 33185013
Alignment:
42 tttgtggtggctgaaagctagcaagattaattttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgactagcttttt 138  Q
    |||||||||| |||||||||| ||   ||  |||| |||| |||||||||| |||||||||||||||||| | ||| || ||||| |||||||||||    
33185109 tttgtggtggttgaaagctagtaatgctacatttgctttcagtactcatttttggtggtcgagcccacttatgtgtgtgtgcatcaactagcttttt 33185013  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 204
Target Start/End: Complemental strand, 10919768 - 10919711
Alignment:
147 ctttgtcacgccttgtgctgaggcgattgcgttgtcagtgttaatataattcattttg 204  Q
    ||||| |||| |||||||||| |  ||| |||||||||||||||||||||||||||||    
10919768 ctttggcacgtcttgtgctgaagtaattacgttgtcagtgttaatataattcattttg 10919711  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 15959333 - 15959370
Alignment:
94 tggtggtcgagcccacttttatgtttgggcatcgacta 131  Q
    |||||||||||||||||||||||| |||||||||||||    
15959333 tggtggtcgagcccacttttatgtatgggcatcgacta 15959370  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 126
Target Start/End: Original strand, 10587381 - 10587415
Alignment:
92 tgtggtggtcgagcccacttttatgtttgggcatc 126  Q
    |||||||||||||||||||| ||||||||||||||    
10587381 tgtggtggtcgagcccacttgtatgtttgggcatc 10587415  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 45439370 - 45439434
Alignment:
73 tttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgactagcttttt 138  Q
    |||||||| |||||||||| |||| |||||||||||||| | ||||||||||||| ||||||||||    
45439370 tttgtttttggtactcatt-gtggcggtcgagcccacttgtgtgtttgggcatcggctagcttttt 45439434  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 106
Target Start/End: Original strand, 9594695 - 9594729
Alignment:
72 ttttgttttcggtactcatttgtggtggtcgagcc 106  Q
    |||||||||||| ||||||||||||||||||||||    
9594695 ttttgttttcggcactcatttgtggtggtcgagcc 9594729  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 2187081 - 2187028
Alignment:
72 ttttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcat 125  Q
    ||||||||| || |||||| |||||||||||||||| ||| | |||||||||||    
2187081 ttttgtttttgggactcatatgtggtggtcgagcccgcttgtttgtttgggcat 2187028  T

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