View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14964_high_15 (Length: 267)
Name: NF14964_high_15
Description: NF14964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14964_high_15 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 14 - 267
Target Start/End: Complemental strand, 26498896 - 26498643
Alignment:
| Q |
14 |
cataggactgaaaagtgggaccagcatcatttacagaaccttgatactcacgacccttagcaacattaaatttagtctttatactcccactccaccttct |
113 |
Q |
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| T |
26498896 |
cataggactgaaaagtgggaccagcatcatttacagaaccttgatacacacgacccttggaaacattaaatttagtctttatactcccactccaccttct |
26498797 |
T |
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| Q |
114 |
accttgcacatgcatcttctcatatccatcaccattaaaccacccttctctctcctcgcaatgcttaaattccttccacccttcagaaaattctgatccg |
213 |
Q |
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| T |
26498796 |
accttgcacatgcatcttctcatatccatcaccattaaaccacccttctctctcctcgcaatgcttaaattccttccacccttcagaaaattctgatccg |
26498697 |
T |
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| Q |
214 |
tcgtagggtggcgggaggaggtggaggaaggcggcgaaggcgaagtcatggttt |
267 |
Q |
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| T |
26498696 |
tcgtagggtggtgggaggaggtggaggaaggcggcgaaggcgaagtcatggttt |
26498643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 167
Target Start/End: Complemental strand, 26502379 - 26502226
Alignment:
| Q |
14 |
cataggactgaaaagtgggaccagcatcatttacagaaccttgatactcacgacccttagcaacattaaatttagtctttatactcccactccaccttct |
113 |
Q |
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|||| |||||||||||||| |||||||||| | |||||| ||||||||| || ||||||||||||||||| | ||||| ||||||||||||| || |
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| T |
26502379 |
cataagactgaaaagtgggtccagcatcataaatagaaccctgatactcagtccctttagcaacattaaatttggcttttattttcccactccacctcct |
26502280 |
T |
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| Q |
114 |
accttgcacatgcatcttctcatatccatcaccattaaaccacccttctctctc |
167 |
Q |
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| T |
26502279 |
cccttgtaaatgcatctcttcatacccatcatccttaaaccatccttctctctc |
26502226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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