View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14964_high_16 (Length: 260)
Name: NF14964_high_16
Description: NF14964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14964_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 6579068 - 6578837
Alignment:
| Q |
19 |
tttgcagcatcgcttttaaaagaaaaattgtcagtcttgggttcatctggtgtcctagcagatcatcagcttcaagctcaattgcaagaacatcatttga |
118 |
Q |
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| T |
6579068 |
tttgcagcatcgcttttaaaagaaaaattatcagtcttgggttcatctggtgtcctagcagatcatcagcttcaagctcaattgcaagaacatcatttga |
6578969 |
T |
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| Q |
119 |
aagggtgagttgaaatctgtaactgggtagatgaaaataggtaaccagtattttatggaaaactagtcgttagattatattttgtttatggaaaatatgt |
218 |
Q |
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| T |
6578968 |
aagggtgagttgaaatctgtaactgggtagatgaaaataggtaaccagtattttatggaaaactagtcgttagattctattttgtttatggaaaatatgt |
6578869 |
T |
|
| Q |
219 |
aactcattacttttgactcttttctccctttg |
250 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
6578868 |
aactcattacttttgactcttttctccctttg |
6578837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 34241249 - 34241367
Alignment:
| Q |
21 |
tgcagcatcgcttttaaaagaaaaattgtcagtcttgggttcatctggtgtcctagcagatcatcagcttcaagctcaattgcaagaacatcatttgaaa |
120 |
Q |
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||||||||| || |||| |||||| | |||| |||||| |||||||| || ||||||| |||||||||||||||||| | ||||| |||||| | ||| |
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| T |
34241249 |
tgcagcatctgttataaaggaaaaactttcagccttgggatcatctggggtgttagcagaccatcagcttcaagctcaactccaagagcatcatctaaaa |
34241348 |
T |
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| Q |
121 |
gggtgagttgaaatctgta |
139 |
Q |
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| T |
34241349 |
gggtgagttagaatctgta |
34241367 |
T |
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