View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14964_high_21 (Length: 234)
Name: NF14964_high_21
Description: NF14964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14964_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 21552870 - 21552995
Alignment:
| Q |
93 |
ctccaaaaagagaca-gggggagaacattttacaagtaagaa-atatataagaaaattatattatataaactacacgaatgaatctttaaatattttatc |
190 |
Q |
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| T |
21552870 |
ctccaaaaagagacacgggggagaacattttacatgtaaaaatatatataagaaaattatattatataaactacacgaatgaatctttaaata-tttatc |
21552968 |
T |
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| Q |
191 |
tagatgtactagagattgtttatgttat |
218 |
Q |
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| T |
21552969 |
-agatgtactagagattgtttatgttat |
21552995 |
T |
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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 21552801 - 21552846
Alignment:
| Q |
17 |
taggcacacgaaagataccaccaaagaaaaagagaacacctttctt |
62 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21552801 |
taggcacacggaagataccaccaaagaaaaagagaacacctttctt |
21552846 |
T |
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