View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14964_high_5 (Length: 510)

Name: NF14964_high_5
Description: NF14964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14964_high_5
NF14964_high_5
[»] chr2 (11 HSPs)
chr2 (9-494)||(36452346-36452826)
chr2 (97-169)||(37153924-37153996)
chr2 (98-169)||(7833325-7833396)
chr2 (98-169)||(44587673-44587744)
chr2 (100-169)||(25903729-25903798)
chr2 (95-164)||(45651020-45651089)
chr2 (111-163)||(4860275-4860326)
chr2 (100-168)||(8996794-8996862)
chr2 (128-164)||(12486065-12486101)
chr2 (129-157)||(41120030-41120058)
chr2 (97-145)||(41464756-41464804)
[»] chr1 (12 HSPs)
chr1 (95-189)||(101516-101610)
chr1 (95-188)||(101492-101584)
chr1 (95-188)||(40212293-40212386)
chr1 (99-179)||(35944074-35944154)
chr1 (97-160)||(22819176-22819239)
chr1 (95-163)||(39514974-39515042)
chr1 (106-174)||(50105685-50105753)
chr1 (139-186)||(897091-897138)
chr1 (129-161)||(8174165-8174197)
chr1 (96-188)||(22819174-22819266)
chr1 (95-159)||(35944090-35944154)
chr1 (96-164)||(51590471-51590539)
[»] chr4 (18 HSPs)
chr4 (97-169)||(12766883-12766955)
chr4 (95-169)||(54357924-54357998)
chr4 (95-156)||(6724914-6724975)
chr4 (98-206)||(50533369-50533475)
chr4 (101-160)||(10554940-10554999)
chr4 (95-160)||(12766884-12766949)
chr4 (100-164)||(20114104-20114168)
chr4 (129-164)||(21861120-21861155)
chr4 (129-164)||(21916983-21917018)
chr4 (97-160)||(56491115-56491178)
chr4 (98-164)||(26066412-26066478)
chr4 (95-145)||(54673350-54673400)
chr4 (100-169)||(4698668-4698737)
chr4 (351-484)||(19087279-19087412)
chr4 (95-164)||(20459055-20459124)
chr4 (128-164)||(15794799-15794835)
chr4 (98-146)||(30206525-30206573)
chr4 (113-169)||(45828473-45828529)
[»] chr8 (18 HSPs)
chr8 (97-160)||(30112380-30112443)
chr8 (98-161)||(27976764-27976827)
chr8 (98-161)||(28034033-28034096)
chr8 (98-164)||(27976765-27976831)
chr8 (98-164)||(28034034-28034100)
chr8 (100-189)||(325222-325311)
chr8 (95-164)||(9420626-9420695)
chr8 (138-197)||(41175193-41175252)
chr8 (95-169)||(14547793-14547867)
chr8 (99-164)||(27870980-27871045)
chr8 (98-159)||(27870980-27871041)
chr8 (128-161)||(28872189-28872222)
chr8 (98-162)||(27789320-27789384)
chr8 (96-160)||(43409877-43409941)
chr8 (95-157)||(1364161-1364223)
chr8 (98-160)||(10107319-10107377)
chr8 (128-164)||(289152-289188)
chr8 (100-164)||(10396831-10396895)
[»] chr3 (9 HSPs)
chr3 (95-186)||(45361988-45362079)
chr3 (102-164)||(36750790-36750852)
chr3 (95-164)||(28406506-28406575)
chr3 (95-164)||(32711242-32711311)
chr3 (100-169)||(48593187-48593256)
chr3 (98-160)||(32711245-32711307)
chr3 (97-186)||(45362013-45362101)
chr3 (105-169)||(1755893-1755957)
chr3 (129-169)||(26331248-26331288)
[»] chr7 (11 HSPs)
chr7 (95-169)||(47681557-47681631)
chr7 (95-160)||(47612330-47612395)
chr7 (95-160)||(35436262-35436327)
chr7 (97-194)||(37002870-37002967)
chr7 (98-162)||(7430087-7430151)
chr7 (101-189)||(37489783-37489871)
chr7 (98-169)||(37489812-37489883)
chr7 (95-149)||(28838165-28838219)
chr7 (95-169)||(35436256-35436330)
chr7 (95-164)||(40362009-40362078)
chr7 (137-197)||(26422114-26422173)
[»] chr5 (2 HSPs)
chr5 (97-169)||(12442276-12442348)
chr5 (97-186)||(6761051-6761140)
[»] scaffold0025 (1 HSPs)
scaffold0025 (95-169)||(65984-66058)
[»] chr6 (6 HSPs)
chr6 (95-160)||(20703440-20703505)
chr6 (100-164)||(1158284-1158348)
chr6 (101-153)||(2284822-2284874)
chr6 (105-164)||(29938661-29938720)
chr6 (95-169)||(6686855-6686929)
chr6 (96-169)||(20703434-20703507)
[»] scaffold0032 (1 HSPs)
scaffold0032 (95-157)||(47270-47332)


Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 9 - 494
Target Start/End: Original strand, 36452346 - 36452826
Alignment:
Q  9 attattctcattcaaaatatacttcaatatctcacaacactagaaataaatataaaattagctatgaagaaaaatatt-cnnnnnnnaggttcattgaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||  | || |       ||||||||| |||    
T  36452346 attattctcattcaaaatatacttcaatatctcacaacactagaaata----taaaattagctatgaagaaatttttttctttttttaggttcattaaat 36452441  T
Q  108 aagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatatatgagaccgaatgtagtac 207  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  36452442 aagtaatgtatctggttaacaatatagatcagatacatcaattattcaatgaatctagaaaactaatcttttcatat--atatgagaccgaatgtagtac 36452539  T
Q  208 atgtctaagattgacactgtcattcatgtaaatattttctaagatattataacacatatctaagcttttcatatatatgatgacaatgtatatcttgctt 307  Q
    |||||||||  ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36452540 atgtctaagggtgacactttcattcatgtaaatattttctaagatattataacacatgtctaagcttttcatatatatgatgacaatgtatatcttgctt 36452639  T
Q  308 gtaatcagcatttgcaggggagagatgtcgtggagacacggaacaatggtttttcttttcaccaagacaagagagagagttgagaggaggaagaccaaac 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36452640 gtaatcagcatttgcaggggagagatgtcgtggagacacggaacaatggtttttcttttcaccaagacaagatagagagttgagaggaggaagaccaaac 36452739  T
Q  408 agaacaacatcttgtgggtattggaaagctacgggttctcctagctacgtttactcttctaacaacaaagtcattggaataaggaaa 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36452740 agaacaacatcttgtgggtattggaaagctacgggttctcctagctacgtttactcttctaacaacaaagtcattggaataaggaaa 36452826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 37153996 - 37153924
Alignment:
Q  97 gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 169  Q
    ||||||||||||||||||||| |||  | |||||  | |||| |||||||| |||||||||||||||| ||||    
T  37153996 gttcattgaataagtaatgtacctgacttacaatgaaaaccatatacattatttattcaatgaatctaaaaaa 37153924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 7833325 - 7833396
Alignment:
Q  98 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 169  Q
    |||||||||||| | ||||||||| || | |||||||| |||||||||||| |||| ||| |||||| ||||    
T  7833325 ttcattgaataattgatgtatctgatttaaaatatagatcagatacattaactatttaataaatctaaaaaa 7833396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 44587744 - 44587673
Alignment:
Q  98 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 169  Q
    |||||||||| ||| |||||| |||| | |||||||||||| |||||| | |||||||||||| ||| ||||    
T  44587744 ttcattgaatgagtgatgtatgtggtcatcaatatagaccacatacatcatttattcaatgaacctaaaaaa 44587673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 25903729 - 25903798
Alignment:
Q  100 cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 169  Q
    |||||||||| |||||||||| ||| |||||  |||  |||||||||||||||| |||| ||||| ||||    
T  25903729 cattgaataattaatgtatctcgtttacaatgaagagtagatacattaattattaaatgtatctaaaaaa 25903798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 45651020 - 45651089
Alignment:
Q  95 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 164  Q
    ||||| ||||||||| | ||| ||||| |  | |||||||||||||||||| |||||||||| |||||||    
T  45651020 aggtttattgaataactgatgaatctgttctataatatagaccagatacatcaattattcaaagaatcta 45651089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 4860326 - 4860275
Alignment:
Q  111 taatgtatctggttaacaatatagaccagatacattaattattcaatgaatct 163  Q
    |||||||||||||| | | |||||||||||||||| | |||||||||||||||    
T  4860326 taatgtatctggtttata-tatagaccagatacatcagttattcaatgaatct 4860275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 8996794 - 8996862
Alignment:
Q  100 cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaa 168  Q
    |||||||||| |||||||||| ||  | |||| |||| | ||||||| ||||||||||| |||||||||    
T  8996794 cattgaataattaatgtatctagtctataataaagactatatacattgattattcaatgtatctagaaa 8996862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 12486065 - 12486101
Alignment:
Q  128 aatatagaccagatacattaattattcaatgaatcta 164  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  12486065 aatatagaccaaatacatcaattattcaatgaatcta 12486101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 157
Target Start/End: Original strand, 41120030 - 41120058
Alignment:
Q  129 atatagaccagatacattaattattcaat 157  Q
    |||||||||||||||||||||||||||||    
T  41120030 atatagaccagatacattaattattcaat 41120058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 41464756 - 41464804
Alignment:
Q  97 gttcattgaataagtaatgtatctggttaacaatatagaccagatacat 145  Q
    ||||||||||||| |||||||||| ||||  ||||||||| ||||||||    
T  41464756 gttcattgaataattaatgtatctcgttataaatatagactagatacat 41464804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 95 - 189
Target Start/End: Original strand, 101516 - 101610
Alignment:
Q  95 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatata 189  Q
    ||||||||||||||| |||||||||||||| ||||| || |||||||||||||||||||||||||| |||  |||  ||||||||| ||||||||    
T  101516 aggttcattgaataattaatgtatctggtttacaatgtaaaccagatacattaattattcaatgaacctacgaaaagaatcttttcgtatatata 101610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 95 - 188
Target Start/End: Complemental strand, 101584 - 101492
Alignment:
Q  95 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatat 188  Q
    ||||||||||||||| |||||||||||||| ||| | || |||||||||||||||||||||||||| ||| ||||  ||||||||| |||||||    
T  101584 aggttcattgaataattaatgtatctggtttacattgtaaaccagatacattaattattcaatgaaccta-aaaaagaatcttttcttatatat 101492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 95 - 188
Target Start/End: Complemental strand, 40212386 - 40212293
Alignment:
Q  95 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatat 188  Q
    |||| |||||||||| |||||||| |  || ||||||||||||||||| |||||||||||||| ||  ||||||| |||| ||||| |||||||    
T  40212386 aggtccattgaataattaatgtattttttttacaatatagaccagatatattaattattcaataaacttagaaaaataatattttcttatatat 40212293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 35944154 - 35944074
Alignment:
Q  99 tcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatctttt 179  Q
    ||||||||||| ||||||||||| || ||||| |||| |||||||||||||||||||| ||| ||| ||||  ||||||||    
T  35944154 tcattgaataattaatgtatctgctttacaatgtagatcagatacattaattattcaacgaacctaaaaaatgaatctttt 35944074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 22819239 - 22819176
Alignment:
Q  97 gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 160  Q
    ||||||||||||  ||||||||||| || |||||  |||||| |||||||||||||||||||||    
T  22819239 gttcattgaatagttaatgtatctgatttacaatgaagaccatatacattaattattcaatgaa 22819176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 39514974 - 39515042
Alignment:
Q  95 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatct 163  Q
    |||||| |||||||| |||||||||||||| | |||||| | |||||||| || ||||| |||||||||    
T  39514974 aggttcgttgaataactaatgtatctggtttataatatatatcagatacaatagttatttaatgaatct 39515042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 50105753 - 50105685
Alignment:
Q  106 ataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaat 174  Q
    |||| |||||||||| ||| | | |||||| |||||||||| ||||||||||||||||| |||| ||||    
T  50105753 ataattaatgtatctagtttatattatagatcagatacattgattattcaatgaatctaaaaaattaat 50105685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 897091 - 897138
Alignment:
Q  139 gatacattaattattcaatgaatctagaaaactaatcttttcatatat 186  Q
    |||||||||||||||||||| ||||| |||| |||||||||| |||||    
T  897091 gatacattaattattcaatgtatctaaaaaaataatcttttcttatat 897138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 8174165 - 8174197
Alignment:
Q  129 atatagaccagatacattaattattcaatgaat 161  Q
    ||||||||||||||||||||| |||||||||||    
T  8174165 atatagaccagatacattaatcattcaatgaat 8174197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 188
Target Start/End: Original strand, 22819174 - 22819266
Alignment:
Q  96 ggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatat 188  Q
    |||||||||||||| |||||||| ||||   || | || | |||||||||||| |||||||||||  || ||||  ||||||||| |||||||    
T  22819174 ggttcattgaataattaatgtatatggtcttcattgtaaatcagatacattaactattcaatgaacgtaaaaaaagaatcttttcttatatat 22819266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 35944090 - 35944154
Alignment:
Q  95 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatga 159  Q
    |||||| |||||||| ||||||||||| |  ||| | || | |||||||||||||||||||||||    
T  35944090 aggttcgttgaataattaatgtatctgatctacattgtaaagcagatacattaattattcaatga 35944154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 51590471 - 51590539
Alignment:
Q  96 ggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 164  Q
    ||||||| |||||| |||||||||| ||||  ||||||||| |||||||| | |||  |||||||||||    
T  51590471 ggttcatagaataattaatgtatcttgttataaatatagactagatacatcacttacacaatgaatcta 51590539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 12766883 - 12766955
Alignment:
Q  97 gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 169  Q
    ||||||||||||| ||||||||||  || ||||| ||||||||||||||||||||||||||||| ||| ||||    
T  12766883 gttcattgaataattaatgtatctactttacaatgtagaccagatacattaattattcaatgaacctaaaaaa 12766955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 54357998 - 54357924
Alignment:
Q  95 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 169  Q
    ||||||||| ||||| ||||||||||| || ||||| ||||||||||||||||| || |||||||| ||| ||||    
T  54357998 aggttcatttaataattaatgtatctgttttacaatgtagaccagatacattaactactcaatgaacctaaaaaa 54357924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 6724975 - 6724914
Alignment:
Q  95 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaa 156  Q
    ||||||||||||||| |||| |||||| ||  |||| |||||||||||||||||||||||||    
T  6724975 aggttcattgaataattaatatatctgtttttcaatgtagaccagatacattaattattcaa 6724914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 206
Target Start/End: Original strand, 50533369 - 50533475
Alignment:
Q  98 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatatatgagaccg 197  Q
    |||||| ||||| |||| |||||| || ||||| ||||||||||||||||| || |||||||| ||| |||| |||| |||||   ||||| ||||||||    
T  50533369 ttcattaaataattaatatatctgctttacaatgtagaccagatacattaactactcaatgaacctaaaaaaataatattttc--ttatatttgagaccg 50533466  T
Q  198 aatgtagta 206  Q
    |||| ||||    
T  50533467 aatgaagta 50533475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 10554940 - 10554999
Alignment:
Q  101 attgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 160  Q
    ||||||||| ||||||||||  || |||||  ||||||||||||||||||||||||||||    
T  10554940 attgaataattaatgtatctactttacaatgaagaccagatacattaattattcaatgaa 10554999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 12766949 - 12766884
Alignment:
Q  95 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 160  Q
    ||||||||||||||| |||||||||||||  ||| | || |  |||||||||||||||||||||||    
T  12766949 aggttcattgaataattaatgtatctggtctacattgtaaagtagatacattaattattcaatgaa 12766884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 20114104 - 20114168
Alignment:
Q  100 cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 164  Q
    |||||||||| | |||||| ||||| | ||||||||||| |||||||| ||||||||| ||||||    
T  20114104 cattgaataatttatgtatttggtttagaatatagaccatatacattagttattcaattaatcta 20114168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 164
Target Start/End: Original strand, 21861120 - 21861155
Alignment:
Q  129 atatagaccagatacattaattattcaatgaatcta 164  Q
    ||||||||||||||||||||||||| ||||||||||    
T  21861120 atatagaccagatacattaattatttaatgaatcta 21861155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 164
Target Start/End: Original strand, 21916983 - 21917018
Alignment:
Q  129 atatagaccagatacattaattattcaatgaatcta 164  Q
    ||||||||||||||||||||||||| ||||||||||    
T  21916983 atatagaccagatacattaattatttaatgaatcta 21917018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 56491178 - 56491115
Alignment:
Q  97 gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 160  Q
    ||||||||||||| ||||||| || ||||  ||||||||| |||||||||| |||| |||||||    
T  56491178 gttcattgaataattaatgtacctcgttataaatatagactagatacattacttatacaatgaa 56491115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 26066412 - 26066478
Alignment:
Q  98 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 164  Q
    |||||||||||| | ||||||| |||  | |||||||||||||||||| | ||||| ||||||||||    
T  26066412 ttcattgaataattgatgtatccggtctagaatatagaccagatacatcagttatttaatgaatcta 26066478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 145
Target Start/End: Original strand, 54673350 - 54673400
Alignment:
Q  95 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacat 145  Q
    ||||||||||||||||||||| |||| ||||  ||||||||| ||||||||    
T  54673350 aggttcattgaataagtaatgcatctcgttataaatatagactagatacat 54673400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 4698668 - 4698737
Alignment:
Q  100 cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 169  Q
    |||||||||| | |||||||||||| | | | ||||||| |||||| |||||||||||| ||||| ||||    
T  4698668 cattgaataatttatgtatctggtttagattctagaccatatacataaattattcaatgtatctaaaaaa 4698737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 484
Target Start/End: Complemental strand, 19087412 - 19087279
Alignment:
Q  351 caatggtttttcttttcaccaagacaagagagagagttgagaggaggaagaccaaacagaacaacatcttgtgggtattggaaagctacgggttctccta 450  Q
    ||||||||||||||||||||| | |||||||||||    || ||||| ||||| || ||||| ||  ||||||| || ||||| || || |||||||||     
T  19087412 caatggtttttcttttcaccaggtcaagagagagaagcaaggggagggagacctaatagaactactgcttgtggatactggaaggcaacaggttctcctg 19087313  T
Q  451 gctacgtttactcttctaacaacaaagtcattgg 484  Q
    | || ||||| |||||  | |||||||| |||||    
T  19087312 gttatgtttattcttcagataacaaagttattgg 19087279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 20459055 - 20459124
Alignment:
Q  95 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 164  Q
    ||||||||| ||||| |||| ||| || || | ||| ||||||||||||||||| || ||||||||||||    
T  20459055 aggttcattaaataattaatatatatgttttaaaatgtagaccagatacattaactactcaatgaatcta 20459124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 15794835 - 15794799
Alignment:
Q  128 aatatagaccagatacattaattattcaatgaatcta 164  Q
    |||| |||||||||||||||||||||||||| |||||    
T  15794835 aataaagaccagatacattaattattcaatgtatcta 15794799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 30206573 - 30206525
Alignment:
Q  98 ttcattgaataagtaatgtatctggttaacaatatagaccagatacatt 146  Q
    |||||||||||| | |||||||||||| | ||||||||||| |||||||    
T  30206573 ttcattgaataattgatgtatctggtttataatatagaccaaatacatt 30206525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 45828473 - 45828529
Alignment:
Q  113 atgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 169  Q
    |||||| ||||| | | ||||||||| |||||||||||| |||||||||||| ||||    
T  45828473 atgtatttggtttatattatagaccaaatacattaattactcaatgaatctaaaaaa 45828529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 30112443 - 30112380
Alignment:
Q  97 gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 160  Q
    ||||||||||||| ||||||||||  |||||||| ||||||| |||||||||||||||||||||    
T  30112443 gttcattgaataattaatgtatctatttaacaatgtagaccaaatacattaattattcaatgaa 30112380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 27976827 - 27976764
Alignment:
Q  98 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaat 161  Q
    |||||||||||| |||||||||||||  ||| |||||||||||| ||||||||||| |||||||    
T  27976827 ttcattgaataattaatgtatctggtctacattatagaccagatgcattaattatttaatgaat 27976764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 28034096 - 28034033
Alignment:
Q  98 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaat 161  Q
    |||||||||||| |||||||||||||  ||| |||||||||||| ||||||||||| |||||||    
T  28034096 ttcattgaataattaatgtatctggtctacattatagaccagatgcattaattatttaatgaat 28034033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 27976765 - 27976831
Alignment:
Q  98 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 164  Q
    |||||| ||||| ||||| |||||||  | ||| |||||||||||||||||||||||||||||||||    
T  27976765 ttcattaaataattaatgcatctggtctataatgtagaccagatacattaattattcaatgaatcta 27976831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 28034034 - 28034100
Alignment:
Q  98 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 164  Q
    |||||| ||||| ||||| |||||||  | ||| |||||||||||||||||||||||||||||||||    
T  28034034 ttcattaaataattaatgcatctggtctataatgtagaccagatacattaattattcaatgaatcta 28034100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 100 - 189
Target Start/End: Complemental strand, 325311 - 325222
Alignment:
Q  100 cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatata 189  Q
    |||||||||| |||||||||| ||| |||||  |||| |||||||||||||||| |||| ||||| ||||  ||| ||||| ||||||||    
T  325311 cattgaataattaatgtatctcgtttacaatgaagactagatacattaattattaaatgtatctaaaaaaagaatattttcttatatata 325222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 164
Target Start/End: Complemental strand, 9420695 - 9420626
Alignment:
Q  95 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 164  Q
    |||||| |||||||| ||||||| || ||||  |||||||||||||||||||| |||| |||||||||||    
T  9420695 aggttctttgaataattaatgtacctcgttataaatatagaccagatacattacttatacaatgaatcta 9420626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 41175252 - 41175193
Alignment:
Q  138 agatacattaattattcaatgaatctagaaaactaatcttttcatatatatatgagaccg 197  Q
    |||||| |||||||||||||||||||| ||||  || |||||| ||||||||||||||||    
T  41175252 agatacgttaattattcaatgaatctaaaaaaggaaacttttcttatatatatgagaccg 41175193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 14547867 - 14547793
Alignment:
Q  95 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 169  Q
    ||||||||| ||||| ||||||||||| || ||||| ||||||||||| ||||| || |||||||| ||| ||||    
T  14547867 aggttcattaaataattaatgtatctgctttacaatgtagaccagatagattaactactcaatgaacctaaaaaa 14547793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 164
Target Start/End: Original strand, 27870980 - 27871045
Alignment:
Q  99 tcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 164  Q
    ||||| ||||| ||| | |||||||  | ||| |||||||||||||||||||||||||||||||||    
T  27870980 tcattaaataattaaagcatctggtctataatgtagaccagatacattaattattcaatgaatcta 27871045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 27871041 - 27870980
Alignment:
Q  98 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatga 159  Q
    |||||||||||| |||||||||||||  ||| |||||||||||| | ||||||||| |||||    
T  27871041 ttcattgaataattaatgtatctggtctacattatagaccagatgctttaattatttaatga 27870980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 28872189 - 28872222
Alignment:
Q  128 aatatagaccagatacattaattattcaatgaat 161  Q
    ||||||||||||||||||||||||||||||||||    
T  28872189 aatatagaccagatacattaattattcaatgaat 28872222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 27789384 - 27789320
Alignment:
Q  98 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatc 162  Q
    |||||||||||| | |||||| |||| || | |||| ||||||||||| ||||||||||||||||    
T  27789384 ttcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 27789320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 43409941 - 43409877
Alignment:
Q  96 ggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 160  Q
    |||||||||||||| ||||||| || ||||  ||||||||| |||||||||| |||| |||||||    
T  43409941 ggttcattgaataattaatgtacctcgttataaatatagactagatacattacttatacaatgaa 43409877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 1364223 - 1364161
Alignment:
Q  95 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaat 157  Q
    ||||||||||||||| |||||||| | ||| ||| | ||| ||| ||||||||||||||||||    
T  1364223 aggttcattgaataaataatgtatttagtttacattgtagtccaaatacattaattattcaat 1364161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 10107319 - 10107377
Alignment:
Q  98 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 160  Q
    |||||||||||| |||||||| ||||    |||||||||||||||||| | ||||||||||||    
T  10107319 ttcattgaataattaatgtatatggt----aatatagaccagatacatcagttattcaatgaa 10107377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 289188 - 289152
Alignment:
Q  128 aatatagaccagatacattaattattcaatgaatcta 164  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  289188 aatatagaccaaatacattaaatattcaatgaatcta 289152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 10396895 - 10396831
Alignment:
Q  100 cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 164  Q
    ||||||| || | |||||| ||||| | ||||||||||| |||||||| ||||||||| ||||||    
T  10396895 cattgaacaatttatgtatttggtttagaatatagaccatatacattagttattcaattaatcta 10396831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 95 - 186
Target Start/End: Complemental strand, 45362079 - 45361988
Alignment:
Q  95 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatat 186  Q
    ||||| ||||||||| ||||||||||| || ||||| |||||||||||||||||||| ||||||||  || ||||  ||||||||| |||||    
T  45362079 aggttaattgaataattaatgtatctgctttacaatgtagaccagatacattaattactcaatgaacttaaaaaatgaatcttttcttatat 45361988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 164
Target Start/End: Original strand, 36750790 - 36750852
Alignment:
Q  102 ttgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 164  Q
    |||||||| ||||||||||| || ||||| |||| |||||||||||| || ||||||||||||    
T  36750790 ttgaataattaatgtatctgctttacaatgtagatcagatacattaactactcaatgaatcta 36750852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 95 - 164
Target Start/End: Complemental strand, 28406575 - 28406506
Alignment:
Q  95 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 164  Q
    ||||||||||||||| | ||||| | |||  | ||||||||||| ||||||||||||||||| |||||||    
T  28406575 aggttcattgaataatttatgtacccggtctagaatatagaccaaatacattaattattcaacgaatcta 28406506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 32711242 - 32711311
Alignment:
Q  95 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 164  Q
    ||||||||||||||| | |||||| |||   | | |||||||||||||||| ||||||||||||||||||    
T  32711242 aggttcattgaataattgatgtatttggcctatattatagaccagatacatcaattattcaatgaatcta 32711311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 48593187 - 48593256
Alignment:
Q  100 cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 169  Q
    |||||||||| | ||||||| |||  | ||||||||||| |||||| |||||||||||||||||| ||||    
T  48593187 cattgaataattgatgtatcgggtctagaatatagaccaaatacataaattattcaatgaatctaaaaaa 48593256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 32711307 - 32711245
Alignment:
Q  98 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 160  Q
    |||||||||||| | |||||||||||  | ||||||| ||| |||||| ||||||||||||||    
T  32711307 ttcattgaataattgatgtatctggtctataatataggccaaatacatcaattattcaatgaa 32711245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 186
Target Start/End: Original strand, 45362013 - 45362101
Alignment:
Q  97 gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatat 186  Q
    ||||||||| ||| |||||||||||||  ||| | || | ||||||||||||||||||||| || ||| ||||  ||||||||| |||||    
T  45362013 gttcattgagtaattaatgtatctggtctacattgtaaagcagatacattaattattcaattaaccta-aaaaagaatcttttcttatat 45362101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 1755957 - 1755893
Alignment:
Q  105 aataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 169  Q
    ||||| |||||||||||||    | ||| ||||| |||||||||||||| |||||||||||||||    
T  1755957 aataactaatgtatctggtctgtattatggaccaaatacattaattattgaatgaatctagaaaa 1755893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 26331288 - 26331248
Alignment:
Q  129 atatagaccagatacattaattattcaatgaatctagaaaa 169  Q
    ||||||||||||||||||| | |||||||||| ||||||||    
T  26331288 atatagaccagatacattagtcattcaatgaacctagaaaa 26331248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 47681557 - 47681631
Alignment:
Q  95 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 169  Q
    ||||| ||| ||||| ||||||||||| || ||||||| ||||||||||||||| || |||||||||||| ||||    
T  47681557 aggtttattaaataattaatgtatctgctttacaatatcgaccagatacattaactactcaatgaatctaaaaaa 47681631  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 47612330 - 47612395
Alignment:
Q  95 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 160  Q
    ||||||||||||||| |||||||||| ||||  ||||||||| |||||||||| |||| |||||||    
T  47612330 aggttcattgaataattaatgtatctcgttataaatatagactagatacattacttatacaatgaa 47612395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 35436262 - 35436327
Alignment:
Q  95 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 160  Q
    ||||||||||||||| | ||||||||||| || | |||| || |||||||| ||||||||||||||    
T  35436262 aggttcattgaataacttatgtatctggtcaatattatatactagatacatcaattattcaatgaa 35436327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 97 - 194
Target Start/End: Complemental strand, 37002967 - 37002870
Alignment:
Q  97 gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatatatgaga 194  Q
    ||||||| ||||| |||||||| |  || ||||| ||||| | ||| ||||||||||||||||| ||| ||||  ||| ||||| |||||||||||||    
T  37002967 gttcattaaataaataatgtatttattttacaatgtagacaaaatatattaattattcaatgaacctataaaaagaatattttcttatatatatgaga 37002870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 7430087 - 7430151
Alignment:
Q  98 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatc 162  Q
    |||| ||||||| | |||||| ||||| |||||||||||||||||||| | ||||| ||||||||    
T  7430087 ttcagtgaataatttatgtatttggtttacaatatagaccagatacatcagttatttaatgaatc 7430151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 189
Target Start/End: Complemental strand, 37489871 - 37489783
Alignment:
Q  101 attgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatata 189  Q
    ||||||||| ||||||||||| || ||||| |  || ||||| |||||||||||||||||| ||  ||| |||| ||||| ||||||||    
T  37489871 attgaataattaatgtatctgttttacaatgtgaactagatatattaattattcaatgaatttaagaaaataatattttcttatatata 37489783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 37489812 - 37489883
Alignment:
Q  98 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 169  Q
    |||||||||||| |||| ||||| ||| ||| | || | ||||||||||||||||||||| |||||| ||||    
T  37489812 ttcattgaataattaatatatctagttcacattgtaaaacagatacattaattattcaatcaatctaaaaaa 37489883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 28838219 - 28838165
Alignment:
Q  95 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaat 149  Q
    |||| |||||||||| |||||||||| ||| |||||  |||||||||||||||||    
T  28838219 aggtacattgaataattaatgtatctcgtttacaatgaagaccagatacattaat 28838165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 35436330 - 35436256
Alignment:
Q  95 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 169  Q
    ||||||||||||||| | |||||||| ||  | ||||| |||||||||||| | |||||||||||| ||| ||||    
T  35436330 aggttcattgaataattgatgtatctagtatataatattgaccagatacataagttattcaatgaacctaaaaaa 35436256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 164
Target Start/End: Complemental strand, 40362078 - 40362009
Alignment:
Q  95 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 164  Q
    ||||| ||||||| | |||||||| ||||  |||||||| | || |||||| ||||||||||||||||||    
T  40362078 aggtttattgaatgattaatgtatttggtctacaatataaatcaaatacatcaattattcaatgaatcta 40362009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 26422114 - 26422173
Alignment:
Q  137 cagatacattaattattcaatgaatctagaaaactaatcttttcatatatatatgagaccg 197  Q
    ||||||||||||||||||||| || ||| ||||  ||||||| | ||||||||||||||||    
T  26422114 cagatacattaattattcaattaaccta-aaaaagaatctttccttatatatatgagaccg 26422173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 12442276 - 12442348
Alignment:
Q  97 gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 169  Q
    ||||||| ||||| ||||||||||| || ||||| ||||||||||||||||| || |||||||| ||| ||||    
T  12442276 gttcattaaataattaatgtatctgttttacaatgtagaccagatacattaactactcaatgaacctaaaaaa 12442348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 186
Target Start/End: Complemental strand, 6761140 - 6761051
Alignment:
Q  97 gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatat 186  Q
    ||||||||||||| |||||||| | ||| ||| | ||| ||| ||| ||||||||||||||||| ||| |||| || |||| || |||||    
T  6761140 gttcattgaataaataatgtatttagtttacattgtagtccaaatatattaattattcaatgaacctaaaaaaatattcttctcttatat 6761051  T

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Target: scaffold0025 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 66058 - 65984
Alignment:
Q  95 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 169  Q
    ||||||||||||||| | ||||||  |||| | ||||||||| |||||||| |||| ||||||||||||| ||||    
T  66058 aggttcattgaataatttatgtattcggtttaaaatatagactagatacatgaatttttcaatgaatctaaaaaa 65984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 20703440 - 20703505
Alignment:
Q  95 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 160  Q
    ||||||||||||||  |||||||| ||||  | ||||||||||| ||||||||| |||||||||||    
T  20703440 aggttcattgaatatttaatgtatttggtctataatatagaccaaatacattaaatattcaatgaa 20703505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 1158348 - 1158284
Alignment:
Q  100 cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 164  Q
    |||||||||| | |||||| ||||  | ||||||||||  |||||||||||||||||||||||||    
T  1158348 cattgaataattgatgtatttggtctagaatatagaccgaatacattaattattcaatgaatcta 1158284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 2284822 - 2284874
Alignment:
Q  101 attgaataagtaatgtatctggttaacaatatagaccagatacattaattatt 153  Q
    ||||||||| ||||||||||| || | |||||||| |||||||||||||||||    
T  2284822 attgaataattaatgtatctgatttataatatagatcagatacattaattatt 2284874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 164
Target Start/End: Original strand, 29938661 - 29938720
Alignment:
Q  105 aataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 164  Q
    ||||| |||||||||| ||  |||||| |||| ||||||||||||||||||||| |||||    
T  29938661 aataattaatgtatctagtatacaataaagactagatacattaattattcaatgtatcta 29938720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 6686855 - 6686929
Alignment:
Q  95 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 169  Q
    ||||||||||||||| | |||||| | ||| ||| | ||| ||| ||||||||||||||||||||| ||| ||||    
T  6686855 aggttcattgaataaatgatgtatttagtttacattgtagtccaaatacattaattattcaatgaacctaaaaaa 6686929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 20703507 - 20703434
Alignment:
Q  96 ggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 169  Q
    |||||||||||||  |||||||| ||||  | | ||||||||| ||||||||| ||||||||||| ||| ||||    
T  20703507 ggttcattgaatatttaatgtatttggtctatattatagaccaaatacattaaatattcaatgaacctaaaaaa 20703434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 47270 - 47332
Alignment:
Q  95 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaat 157  Q
    ||||||||||||||| |||| | |||| || | ||| ||||||| ||||||||||||||||||    
T  47270 aggttcattgaataattaatatttctgttttaaaatgtagaccaaatacattaattattcaat 47332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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