View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14964_high_9 (Length: 367)

Name: NF14964_high_9
Description: NF14964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14964_high_9
NF14964_high_9
[»] chr6 (6 HSPs)
chr6 (11-120)||(16977185-16977294)
chr6 (205-329)||(16580793-16580917)
chr6 (205-329)||(16614463-16614587)
chr6 (212-329)||(16572772-16572889)
chr6 (205-329)||(16874654-16874778)
chr6 (32-77)||(16991733-16991778)
[»] chr1 (1 HSPs)
chr1 (206-329)||(7392085-7392208)
[»] chr2 (2 HSPs)
chr2 (206-318)||(233287-233399)
chr2 (206-329)||(21629540-21629662)
[»] scaffold0256 (1 HSPs)
scaffold0256 (230-325)||(10838-10933)
[»] chr7 (1 HSPs)
chr7 (206-318)||(48298403-48298515)


Alignment Details
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 16977185 - 16977294
Alignment:
Q  11 gcagaaagtggaaaagtaaacaatatctgtcctgtttttatcgcatctacttccttctcgcctatactaattaggagaacctccgtctgttggctgcaat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  16977185 gcagaaagtggaaaagtaaacaatatctgtcctgtttttatcgcatctacttccttctcgcctatactaattaggagaacctccgtctgttagttgcaat 16977284  T
Q  111 ccttctcaaa 120  Q
    ||||||||||    
T  16977285 ccttctcaaa 16977294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 205 - 329
Target Start/End: Complemental strand, 16580917 - 16580793
Alignment:
Q  205 atgcttttgtagctcttccattagtctctgcaaggatagataatttctcggtcaactcgaacaccaaagcctgcacccttgactgtttaacattttcgaa 304  Q
    |||||| |||||||||| || || |||  |||||||| |||||||||||||||||||||||| |||||||||||||| | ||  ||| |||||||  |||    
T  16580917 atgcttctgtagctctttcactactcttagcaaggatggataatttctcggtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaa 16580818  T
Q  305 cacaatgcacccagatagttgatcc 329  Q
    |||||||||||||||| | ||||||    
T  16580817 cacaatgcacccagatggctgatcc 16580793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 205 - 329
Target Start/End: Original strand, 16614463 - 16614587
Alignment:
Q  205 atgcttttgtagctcttccattagtctctgcaaggatagataatttctcggtcaactcgaacaccaaagcctgcacccttgactgtttaacattttcgaa 304  Q
    |||||| |||||||||| || || |||  |||||||| |||||||||||||||||||||||| |||||||||||||| | ||  ||| |||||||  |||    
T  16614463 atgcttctgtagctctttcactactcttagcaaggatggataatttctcggtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaa 16614562  T
Q  305 cacaatgcacccagatagttgatcc 329  Q
    |||||||||||||||| | ||||||    
T  16614563 cacaatgcacccagatggctgatcc 16614587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 212 - 329
Target Start/End: Complemental strand, 16572889 - 16572772
Alignment:
Q  212 tgtagctcttccattagtctctgcaaggatagataatttctcggtcaactcgaacaccaaagcctgcacccttgactgtttaacattttcgaacacaatg 311  Q
    |||||||||| ||||| |||  |||||||| ||||||||||| |||||||||||| |||||||||||||| | ||  ||| |||||||  ||||||||||    
T  16572889 tgtagctctttcattactcttagcaaggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatg 16572790  T
Q  312 cacccagatagttgatcc 329  Q
    ||||||||| | ||||||    
T  16572789 cacccagatggctgatcc 16572772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 205 - 329
Target Start/End: Complemental strand, 16874778 - 16874654
Alignment:
Q  205 atgcttttgtagctcttccattagtctctgcaaggatagataatttctcggtcaactcgaacaccaaagcctgcacccttgactgtttaacattttcgaa 304  Q
    |||||| |||||||||| ||||| |||  |||||||| ||||||||||| ||||| |||||| |||||||||||||| | ||  ||| |||||||  |||    
T  16874778 atgcttctgtagctctttcattactcttagcaaggatggataatttctcagtcaattcgaacgccaaagcctgcaccatagagagttcaacatttcggaa 16874679  T
Q  305 cacaatgcacccagatagttgatcc 329  Q
    |||||||||||||||| | ||||||    
T  16874678 cacaatgcacccagatggctgatcc 16874654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 16991733 - 16991778
Alignment:
Q  32 aatatctgtcctgtttttatcgcatctacttccttctcgcctatac 77  Q
    |||||||||| ||||||||||||||  ||||||||||| |||||||    
T  16991733 aatatctgtcttgtttttatcgcataaacttccttctcacctatac 16991778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 206 - 329
Target Start/End: Complemental strand, 7392208 - 7392085
Alignment:
Q  206 tgcttttgtagctcttccattagtctctgcaaggatagataatttctcggtcaactcgaacaccaaagcctgcacccttgactgtttaacattttcgaac 305  Q
    ||||| |||||||||| ||||| ||||||||||||||||||||||||| ||||||| |||  ||||||||||||||||||| |||| |||||||  |||     
T  7392208 tgcttctgtagctctttcattactctctgcaaggatagataatttctcagtcaactggaatgccaaagcctgcacccttgagtgttcaacatttcggaaa 7392109  T
Q  306 acaatgcacccagatagttgatcc 329  Q
    | ||||||||||| | ||||||||    
T  7392108 ataatgcacccagttggttgatcc 7392085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 206 - 318
Target Start/End: Original strand, 233287 - 233399
Alignment:
Q  206 tgcttttgtagctcttccattagtctctgcaaggatagataatttctcggtcaactcgaacaccaaagcctgcacccttgactgtttaacattttcgaac 305  Q
    ||||| |||||||||| ||||| ||||||||||||||||||||||||| ||||||| |||  ||||||||||||||||||| |||| |||||||  |||     
T  233287 tgcttctgtagctctttcattactctctgcaaggatagataatttctcagtcaactggaatgccaaagcctgcacccttgagtgttcaacatttctgaaa 233386  T
Q  306 acaatgcacccag 318  Q
    | |||||||||||    
T  233387 ataatgcacccag 233399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 206 - 329
Target Start/End: Complemental strand, 21629662 - 21629540
Alignment:
Q  206 tgcttttgtagctcttccattagtctctgcaaggatagataatttctcggtcaactcgaacaccaaagcctgcacccttgactgtttaacattttcgaac 305  Q
    ||||| |||||||||| ||||| ||| |||||||||||||| ||| |  |||||||||||| |||| |||||||||||||| |||| |||||||  |||     
T  21629662 tgcttatgtagctctttcattactctttgcaaggatagata-tttattagtcaactcgaacgccaaggcctgcacccttgagtgttcaacatttcggaat 21629564  T
Q  306 acaatgcacccagatagttgatcc 329  Q
    ||||||||||||||| ||||||||    
T  21629563 acaatgcacccagatggttgatcc 21629540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 230 - 325
Target Start/End: Original strand, 10838 - 10933
Alignment:
Q  230 ctctgcaaggatagataatttctcggtcaactcgaacaccaaagcctgcacccttgactgtttaacattttcgaacacaatgcacccagatagttg 325  Q
    |||||||||||||||||||||||| ||||||| ||||  |||||||||||||||||| |||| |||||||| |||||||||||| |||||| ||||    
T  10838 ctctgcaaggatagataatttctcagtcaacttgaacgacaaagcctgcacccttgagtgttcaacattttggaacacaatgcatccagatggttg 10933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 206 - 318
Target Start/End: Original strand, 48298403 - 48298515
Alignment:
Q  206 tgcttttgtagctcttccattagtctctgcaaggatagataatttctcggtcaactcgaacaccaaagcctgcacccttgactgtttaacattttcgaac 305  Q
    ||||| || ||||||| ||||| ||||||||||||||||||||||||| ||||||| |||  |||||||||||||||||||  ||| |||||||  |||     
T  48298403 tgcttctgaagctctttcattactctctgcaaggatagataatttctcagtcaactggaatgccaaagcctgcacccttgagagttcaacatttctgaaa 48298502  T
Q  306 acaatgcacccag 318  Q
    | |||||||||||    
T  48298503 ataatgcacccag 48298515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University