View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14964_low_11 (Length: 356)
Name: NF14964_low_11
Description: NF14964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14964_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 11 - 341
Target Start/End: Original strand, 47127729 - 47128063
Alignment:
| Q |
11 |
cagagatagccgatgaacgattgcagtattggatcgatcataactctaagacacctacctcacaagacgcagttgacggtattgtcaatctcattcatcc |
110 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
47127729 |
cagagatagccgatgagcgattgcagtattggatcgatcataactctaagacacctacctcacaagatgcagttgacggtattgtcaatctcattcaccc |
47127828 |
T |
|
| Q |
111 |
tatatattttagtttgattcaaatcttaatcactattacagtataggttccatcatatcgacnnnnnnnnctgaaaattaagacaatatttacctatttt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
47127829 |
tatatattttagtttgattcaaatcttaatcactattacagtataggttccatcatatcgac-tttttttctgaaaattaagacaatatttacctatttt |
47127927 |
T |
|
| Q |
211 |
agttctgtctcactatttaaacataacttgtattttgtacttttacattgcacaataaaaaatcgtgat----ttcatgtgatttaatatttatctattt |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
47127928 |
agttctgtctcactatttaaacataacttgtattttgtacttttacattgcacaataaaaaatcgtgatttcattcatgtgatttaatatttatctattt |
47128027 |
T |
|
| Q |
307 |
actttagatttatgtttg-ttgtttaacatatttct |
341 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47128028 |
actttagatttatgtttgtttgtttaacatatttct |
47128063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University