View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14964_low_13 (Length: 318)
Name: NF14964_low_13
Description: NF14964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14964_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 6568226 - 6568528
Alignment:
| Q |
16 |
gatgtatgtttgaggcaattgagaatttcttatataaggatttgaggaaggtgtttggttgcttaaattgcttttttgtggattgacatgcatccataag |
115 |
Q |
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| T |
6568226 |
gatgtatgtttgaggcaattgagaatttcttatataaggatttgaggaaggtgtttggttgcttaaattgcttttttgtggattgacatgcatccataag |
6568325 |
T |
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| Q |
116 |
agagtgtggctgaggtgaaaagatgagaatgttccattagatatttgagtcggtttctactttgaacatacaattgtatgaaagtgatgtatgtattcta |
215 |
Q |
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| T |
6568326 |
agagtgtggctgaggtgaaaagatgagaatgttccattagatatttgagtcggtttctactttgaacatacaattgtatgaaagtgatgtatgtattcta |
6568425 |
T |
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| Q |
216 |
tgcaagcaattagaacaaattaattaagacatgtccttggtacggctttcc--nnnnnnnttttaagaaacttgtgcattacatttcccctacctttgct |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| | |
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| T |
6568426 |
tgcaagcaattagaacaaattaattaagacatgtccttggtacggctttccaatttttttttttaagaaacttgtgcattacatttcccctacttttgtt |
6568525 |
T |
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| Q |
314 |
tct |
316 |
Q |
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||| |
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| T |
6568526 |
tct |
6568528 |
T |
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