View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14964_low_14 (Length: 313)
Name: NF14964_low_14
Description: NF14964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14964_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 43538597 - 43538884
Alignment:
| Q |
1 |
ttactatctttatcacaaatcaagatactgactaattaaaggccagcatgatataacgagtatagaaaatcaatttcgaaataggtggttgatatcttgg |
100 |
Q |
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| T |
43538597 |
ttactatctttatcacaaatcaagatactgactaattaaaggccagcatgatataacgagtatagaaaatcaatttcgaaataggtggttgatatcttgg |
43538696 |
T |
|
| Q |
101 |
agtattaatcttgctagtcttatgaacccatgtaatgcacagggagaaattgaaaagagttaacattaggaatggtttataatttgatgtgttcaattac |
200 |
Q |
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| T |
43538697 |
agtattaatcttgctagtcttatgaacccatgtaatgcacagggagaaattgaaaagagttaacattaggaatggtttataatttgatgtgttcaattac |
43538796 |
T |
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| Q |
201 |
tgagcaacaacaatgtctaaccacctctcagaaaaagaagnnnnnnnncgacgtttaaccataaatcatagtataacacattacaccc |
288 |
Q |
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| T |
43538797 |
tgagcaacaacaatgtctaaccacctctcagaaaaagaagaaaaaaaacgacgtttaaccataaatcatagtataacacattacaccc |
43538884 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 35045605 - 35045642
Alignment:
| Q |
176 |
tttataatttgatgtgttcaattactgagcaacaacaa |
213 |
Q |
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| T |
35045605 |
tttataatttgttgtgttcaattattgagcaacaacaa |
35045642 |
T |
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