View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14964_low_19 (Length: 256)
Name: NF14964_low_19
Description: NF14964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14964_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 87 - 241
Target Start/End: Complemental strand, 34454121 - 34453962
Alignment:
| Q |
87 |
actttgatccta--caaaaagtttatcaaacacacaaaataaacgaacaagatttatatacacaaattgcnnnnnnnnnnnn---gaacacttcaagaaa |
181 |
Q |
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| T |
34454121 |
actttgatcctatacaaaaagtttttgaagcacacaaaataaacgaacaagatttatatatacaaattgcaaaaagaaaaaaaaggaacacttcaagaaa |
34454022 |
T |
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| Q |
182 |
atgtacccaaacaaatagcagcttatttttggattcttctcctatagcaaaagttaaagc |
241 |
Q |
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| T |
34454021 |
atgtacccaaacaaatagcagcttatttttggattcttctccaatagcaaaagttaaagc |
34453962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 37 - 144
Target Start/End: Original strand, 41885226 - 41885333
Alignment:
| Q |
37 |
ggcttctcttttttctccattgatttcataccaatcatatgaaaacattgactttgatcctacaaaaagtttatcaaacacacaaaataaacgaacaaga |
136 |
Q |
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| T |
41885226 |
ggcttctcttttttctccattgatttcataccaatacaatagaaacaatgactttgatcctacaaaaagtttatgaaacacacaaaataaaccaacaaga |
41885325 |
T |
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| Q |
137 |
tttatata |
144 |
Q |
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|||||||| |
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| T |
41885326 |
tttatata |
41885333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 167 - 241
Target Start/End: Complemental strand, 41829337 - 41829263
Alignment:
| Q |
167 |
gaacacttcaagaaaatgtacccaaacaaatagcagcttatttttggattcttctcctatagcaaaagttaaagc |
241 |
Q |
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| T |
41829337 |
gaacacttcaagaaaatgtacccaaacaaatagcagcttatttttggattcttctcctatagcaaaagttaaagc |
41829263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 167 - 241
Target Start/End: Original strand, 41885375 - 41885449
Alignment:
| Q |
167 |
gaacacttcaagaaaatgtacccaaacaaatagcagcttatttttggattcttctcctatagcaaaagttaaagc |
241 |
Q |
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| T |
41885375 |
gaacacttcaagaaaatgtacccaaataaatagcagcttatttttggattcttctcctatagcaaaagttaaagc |
41885449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 41829439 - 41829375
Alignment:
| Q |
37 |
ggcttctcttttttctccattgatttcataccaatcatatgaaaacattgactttgatcctacaa |
101 |
Q |
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| T |
41829439 |
ggcttctcttttttctccattgatttcataccaatacaatagaaacaatgactttgatcctacaa |
41829375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 41896379 - 41896419
Alignment:
| Q |
171 |
acttcaagaaaatgtacccaaacaaatagcagcttattttt |
211 |
Q |
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| T |
41896379 |
acttcaagtaaatgtacccaaacaaatagtagcttgttttt |
41896419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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