View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14964_low_2 (Length: 726)
Name: NF14964_low_2
Description: NF14964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14964_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 181; Significance: 2e-97; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 44749220 - 44749020
Alignment:
| Q |
1 |
ctaggaaaatctaaaagaaatgtggtgtagtagaaacctgctaatagaatcacaatgttccctgaaagctgatttcaccaaagtaactgaataggttctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44749220 |
ctaggaaaatctaaaagaaatgtggtgtagtggaaacctgctaatagaatcacaatgttccctgaaagctgatttcacaaaagtaactgaataggttctt |
44749121 |
T |
|
| Q |
101 |
tttaatagacctcaagtaaaattacaaagtaatactactagtcaactataggccgttattttttaactccattgtaaagtacttaacttaaggttaagag |
200 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44749120 |
tttaataaacctcaagtaaaattacaaaataatactactagtcaactataggccgttattttttaattccattgtaaagtacttaacttaaggttaagag |
44749021 |
T |
|
| Q |
201 |
g |
201 |
Q |
| |
|
| |
|
|
| T |
44749020 |
g |
44749020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 202 - 409
Target Start/End: Complemental strand, 44748964 - 44748769
Alignment:
| Q |
202 |
aacacatcaatggtgagaagatttgaagaaggaagacaaatttgtagagcgtcagccacttggagaaaaaagatcaaccagtttgttcctttccttcttg |
301 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44748964 |
aacacatcaacggtgagaagatttgaagaaggaagacaaatttgtagagcgtcagccacttggagaaaaaagatcaaccagtttgttcctttccttcttg |
44748865 |
T |
|
| Q |
302 |
gttgcaagattaagaggtgtgcagaggggaattttatatagtacatgttacattgaattgaatgaaaatttgtaattgaaattgtggcatggttcatttc |
401 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44748864 |
gttgcaagattaagaggtgtgcagaggagaattttatatgctac------------attgaatgaaaatttgtaattgaaattgtggcatggttcatttc |
44748777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 44748660 - 44748749
Alignment:
| Q |
1 |
ctaggaaaatctaaaagaaatgtggtgtagtagaaacctgctaatagaatcacaatgttccctgaaagctgatttcaccaaagtaactga |
90 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
44748660 |
ctaggaaaatctaaatgaaatgtggtgtagtggaaacctgctaatagaatcacaatgttccctgaaagctgatttcacaaaagtaactga |
44748749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 601 - 677
Target Start/End: Original strand, 15540210 - 15540286
Alignment:
| Q |
601 |
tactaatgatgtttcaaaactgttacaaaaaatgtaaacaagtaacatttttcaagtgttgctaataatactaaaaa |
677 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||| |
|
|
| T |
15540210 |
tactaatgatgattcaaaactgttacaaaaaatgtaaacaagtaacattttttaattgttactaataatactaaaaa |
15540286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 372 - 469
Target Start/End: Complemental strand, 832530 - 832430
Alignment:
| Q |
372 |
tgtaattgaaattgtg---gcatggttcatttccactatgaaatccaatttcaaatttttgtattagagcatatcaggtgtcttgaatctaattaaagtt |
468 |
Q |
| |
|
|||||||||||||||| | || ||| ||||||| |||||||||||||||||||| ||||||| ||| |||| || ||||||| ||||| ||||||| |
|
|
| T |
832530 |
tgtaattgaaattgtgtttgtatagtttatttccattatgaaatccaatttcaaatgtttgtatgagaatatatttggagtcttgagtctaaataaagtt |
832431 |
T |
|
| Q |
469 |
t |
469 |
Q |
| |
|
| |
|
|
| T |
832430 |
t |
832430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 438 - 478
Target Start/End: Original strand, 15540053 - 15540093
Alignment:
| Q |
438 |
catatcaggtgtcttgaatctaattaaagtttgatcttcaa |
478 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
15540053 |
catatcaagagtcttgaatctaattaaagtttgatcttcaa |
15540093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 715
Target Start/End: Complemental strand, 44752648 - 44752617
Alignment:
| Q |
684 |
ggtgatgatcatttgagtggtggtgatgatgt |
715 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
44752648 |
ggtgatgatcatttgagtggtggtgatgatgt |
44752617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 372 - 432
Target Start/End: Original strand, 39073939 - 39074001
Alignment:
| Q |
372 |
tgtaattgaaattgtg--gcatggttcatttccactatgaaatccaatttcaaatttttgtat |
432 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||| ||||||||| |||||||||| ||||||| |
|
|
| T |
39073939 |
tgtaattgaaattgtgttgcatagttcatttccaatatgaaatcaaatttcaaatatttgtat |
39074001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 566 - 611
Target Start/End: Complemental strand, 27136143 - 27136098
Alignment:
| Q |
566 |
gcaaaaattataagtaggcgacaattttttattgttactaatgatg |
611 |
Q |
| |
|
||||||||||||||||||| ||| ||| |||||||||||||||||| |
|
|
| T |
27136143 |
gcaaaaattataagtaggcaacattttattattgttactaatgatg |
27136098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 388 - 442
Target Start/End: Original strand, 20277049 - 20277103
Alignment:
| Q |
388 |
gcatggttcatttccactatgaaatccaatttcaaatttttgtattagagcatat |
442 |
Q |
| |
|
|||| ||||||||||| ||||||||| |||||||||| ||||||| ||| ||||| |
|
|
| T |
20277049 |
gcatagttcatttccattatgaaatcaaatttcaaatgtttgtatgagaacatat |
20277103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 388 - 442
Target Start/End: Complemental strand, 29345839 - 29345785
Alignment:
| Q |
388 |
gcatggttcatttccactatgaaatccaatttcaaatttttgtattagagcatat |
442 |
Q |
| |
|
|||| ||||||||||| ||||||||| |||||||||| ||||||| ||| ||||| |
|
|
| T |
29345839 |
gcatagttcatttccattatgaaatcaaatttcaaatgtttgtatgagaacatat |
29345785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 628 - 677
Target Start/End: Original strand, 11654974 - 11655022
Alignment:
| Q |
628 |
aaaaatgtaaacaagtaacatttttcaagtgttgctaataatactaaaaa |
677 |
Q |
| |
|
||||||||||||||||||||||||| || |||| ||||| |||||||||| |
|
|
| T |
11654974 |
aaaaatgtaaacaagtaacattttttaattgttactaat-atactaaaaa |
11655022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University