View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14964_low_22 (Length: 234)
Name: NF14964_low_22
Description: NF14964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14964_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 46958479 - 46958276
Alignment:
| Q |
14 |
aagcaaaggcgaataaggagtttaacacaacaaaaatatcttcgttccaggctttatcagcacatgtttggagatgtgtcacacgtgcacgcggactaac |
113 |
Q |
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| T |
46958479 |
aagcaaaggcgaataaggagtttaacacaacaaaaatatcttcgttccaggctttatcagcacatgtttggagatgtgtcacacgtgcacgcggactaac |
46958380 |
T |
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| Q |
114 |
aaatgatcaaaaaacaagttgtaagttagctataaataatcgactaagattggaaccacctttgccgcaggagtactttggaaacacagttgatgtggtt |
213 |
Q |
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| T |
46958379 |
aaatgatcaaaaaacaagttgtaagttagctataaataatcgactaagattggaaccacctttgccgcaggagtactttggaaacacagttgatgtggtt |
46958280 |
T |
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| Q |
214 |
agtg |
217 |
Q |
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|||| |
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| T |
46958279 |
agtg |
46958276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 47 - 212
Target Start/End: Complemental strand, 46955593 - 46955428
Alignment:
| Q |
47 |
aaatatcttcgttccaggctttatcagcacatgtttggagatgtgtcacacgtgcacgcggactaacaaatgatcaaaaaacaagttgtaagttagctat |
146 |
Q |
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| T |
46955593 |
aaatatcttccttccaatctttatcggcatttgtttggagaagtgtgacttgtgcacgaagactaaaacatgatcaaaaaaccagttgcaagttagccat |
46955494 |
T |
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| Q |
147 |
aaataatcgactaagattggaaccacctttgccgcaggagtactttggaaacacagttgatgtggt |
212 |
Q |
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| T |
46955493 |
aaacaatagatcaagaatcaaaccacctctcccgcaagagtactttggaaactcagttgatgtggt |
46955428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 174
Target Start/End: Complemental strand, 46951298 - 46951138
Alignment:
| Q |
14 |
aagcaaaggcgaataaggagtttaacacaacaaaaatatcttcgttccaggctttatcagcacatgtttggagatgtgtcacacgtgcacgcggactaac |
113 |
Q |
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|||| ||||| |||| ||||| ||| |||| ||||| ||||| ||||| ||||||||||||||||||||||| || | || ||||| |||| ||||| |
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| T |
46951298 |
aagctaaggccaatatggagtctaatacaaacaaaatctcttcattccaatctttatcagcacatgtttggagaggtataactcgtgctcgcgacctaac |
46951199 |
T |
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| Q |
114 |
aaatgatcaaaaaacaagttgtaagttagctataaataatcgactaagattggaaccacct |
174 |
Q |
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||||||||| ||||| ||||| |||||| |||||||||||| ||| || |||||||| |
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| T |
46951198 |
gaatgatcaagtaacaacttgtatgttagccgtaaataatcgaccgagaatgaaaccacct |
46951138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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