View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14964_low_4 (Length: 574)
Name: NF14964_low_4
Description: NF14964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14964_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 93 - 551
Target Start/End: Complemental strand, 40691313 - 40690847
Alignment:
| Q |
93 |
gagtaagaaagttaaccggagaatagtttagagacaaaaattatatggtcccatagagtttactaaaataaactttatacgtacatttactnnnnnnnnt |
192 |
Q |
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| T |
40691313 |
gagtaagaaagttaaccagagaatagtttagagacaaaaattatatggtcccatacagtttactaaaataagcttcatacgtacatttactaaaaaaaat |
40691214 |
T |
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| Q |
193 |
tgattattattttatatattgatggattcctacatggaccggaatccacaacgatgaggatagagagaaaaactccccgagacggagaggacatggatgg |
292 |
Q |
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| T |
40691213 |
tgattattattttatatattgatggattcctacatggaccggaatccacaacgatgaggatagagagaaaaactccccgagacggagaggacatggatgg |
40691114 |
T |
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| Q |
293 |
agcattttgggtgctagggacgggaagcgggggg-------atactccgctgcct-gccctgttgacatcccttactgtaacttaggttcaagaccgaaa |
384 |
Q |
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| T |
40691113 |
agcattttgggtgctagggacgggaggggggggggggggggatactccccttccttgccccgttgacatcgcttactgtaacttaggttcaagaccgaaa |
40691014 |
T |
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| Q |
385 |
ttctgtcgtcggtagattatatgtcaatttcattctaaatcttggaaaagtatgattatctttcacttgcatcaagtgtgcctcccttaatctaaattaa |
484 |
Q |
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| T |
40691013 |
ttttgtcctcggtagattatatttcaatttcattctaaatcttggaaaagtatgattatctttcacttgtatcaagtgtgcctcccttaatctaaattaa |
40690914 |
T |
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| Q |
485 |
ttaaaacagaaaaaatctaatcatctctttagatttcaatcataatctatattaaatgacaacatat |
551 |
Q |
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| T |
40690913 |
ttaaaacagaaaaaatctaatcatctctttagatttcaatcataatctatattaaatgacaacatat |
40690847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 40691372 - 40691327
Alignment:
| Q |
14 |
agatgtcagtttgtatccggaaatggtgatatgtgtgagaactgtc |
59 |
Q |
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| T |
40691372 |
agatgtcagtttgtatccggaagtcgtgatatatgtgagaactgtc |
40691327 |
T |
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