View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14964_low_5 (Length: 571)
Name: NF14964_low_5
Description: NF14964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14964_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 151 - 554
Target Start/End: Original strand, 33539600 - 33540003
Alignment:
| Q |
151 |
gggtcttaaatggattttagtgaaattattatgtaattttcaaattttactacatattcaccatttcttcttcaagacatactaagggcgtacttatccg |
250 |
Q |
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| T |
33539600 |
gggtcttaaatggattttagtgaaattcttatgtaattttcaaatgttactacatattcaccatttcttcttcaagacatactaagggcgtacttatccg |
33539699 |
T |
|
| Q |
251 |
attgtattgattcaacatgtgatggaaatctaagaaaaagaaatacaacttttatgttgaatccaaagcaaaatataaagttaattttatcattcttttg |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33539700 |
attgtattgattcaacatgtgatggaaatctaagaaaaagaaatacaacttttatgttgaatccaaagcaaaatataaagttaactttatcattcttttg |
33539799 |
T |
|
| Q |
351 |
aaataattnnnnnnntatgatataaaatttatattttgtgagtgtgcctaaaagatttatatttgggcttgtgactatctaaaaataatccaatccgaaa |
450 |
Q |
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| T |
33539800 |
aaataattaaaaaaatatgatataaaatttatattttgtgagtgtgtttaaaagatttgtatttgggcttgtgactatctaagaataatccaatccgaaa |
33539899 |
T |
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| Q |
451 |
cccaaatttcaaataagacgttttgatgttcaaatttgctaattattgaagctactctatataatgcatgttttgggttatttactctagtaactattgt |
550 |
Q |
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| T |
33539900 |
cccaaattccaaataagacgttttgatgatcaaatttgctaattattgaagctactctatataatgcatgttttgggttatttactctagtaactattgt |
33539999 |
T |
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| Q |
551 |
tatt |
554 |
Q |
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|||| |
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| T |
33540000 |
tatt |
33540003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 33539264 - 33539385
Alignment:
| Q |
8 |
caaagtttatttgcctaaatccagaaactataaaatataagtctatgattatgtgtgagtcaatgctaactttgttatagcattgcactttgcattttta |
107 |
Q |
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| T |
33539264 |
caaagtttacttgcctaaatccagaaactataaaatataagtctatgattatgtgtgagtcaatgctaactttgttatagcattgcactttgcattttta |
33539363 |
T |
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| Q |
108 |
aat-tgtgcgcccaatactaac |
128 |
Q |
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||| |||||||||||||||||| |
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| T |
33539364 |
aatgtgtgcgcccaatactaac |
33539385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 441
Target Start/End: Complemental strand, 36596255 - 36596128
Alignment:
| Q |
315 |
aaagcaaaatataaagttaattttatcatt-cttttgaaataattnnnnnnntatgatataaaatttatattttgtgagtgtgcctaaaagatttatatt |
413 |
Q |
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|||||||||||||||||||| ||||||||| ||||| |||||||| || ||| | ||| ||||||||| |||||||||||||| |||| || | |
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| T |
36596255 |
aaagcaaaatataaagttaactttatcattactttttaaataattaaaagaataagatgtgaaaattatattttttgagtgtgcctaaattatttgtaat |
36596156 |
T |
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| Q |
414 |
tgggcttgtgactatctaaaaataatcc |
441 |
Q |
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|||| | ||| ||||||| |||||||| |
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| T |
36596155 |
tgggttgatgagtatctaagaataatcc |
36596128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 315 - 442
Target Start/End: Complemental strand, 12692764 - 12692636
Alignment:
| Q |
315 |
aaagcaaaatataaagttaattttatcattctttt-gaaataattnnnnnnntatgatataaaatttatattttgtgagtgtgcctaaaagatttatatt |
413 |
Q |
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|||||||||||||||||||| ||||||||| |||| ||||||||| |||| | | ||||||||||||||||||||||||||||||||| |||| |
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| T |
12692764 |
aaagcaaaatataaagttaactttatcattatttttgaaataattaaaagaatatggtgtggaatttatattttgtgagtgtgcctaaaagatttgtatt |
12692665 |
T |
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| Q |
414 |
tgggcttgtgactatctaaaaataatcca |
442 |
Q |
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| T |
12692664 |
tgggcttgtgactatctaagaataatcca |
12692636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 376 - 441
Target Start/End: Original strand, 48440676 - 48440741
Alignment:
| Q |
376 |
aatttatattttgtgagtgtgcctaaaagatttatatttgggcttgtgactatctaaaaataatcc |
441 |
Q |
| |
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|||||||||||||||| ||||||||||| |||| ||||||| ||||||||||||||| |||||||| |
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| T |
48440676 |
aatttatattttgtgaatgtgcctaaaaaatttgtatttggtcttgtgactatctaagaataatcc |
48440741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 358
Target Start/End: Complemental strand, 44356780 - 44356736
Alignment:
| Q |
315 |
aaagcaaaatataaagttaattttatcatt-cttttgaaataatt |
358 |
Q |
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||||||||||| |||||||| ||||||||| |||||||||||||| |
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| T |
44356780 |
aaagcaaaatacaaagttaactttatcattacttttgaaataatt |
44356736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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