View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14964_low_8 (Length: 483)
Name: NF14964_low_8
Description: NF14964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14964_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 21 - 403
Target Start/End: Original strand, 4067105 - 4067484
Alignment:
| Q |
21 |
gcacttactgcacaacgatgctaataacataattaaccatacaatnnnnnnnnnttagcgagaaaagtgaaaagtgnnnnnnnnnnnnnnncagttgagc |
120 |
Q |
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| T |
4067105 |
gcacttactgcacaacgatgctaataacataattaaccatacaataaaaaaaa-ttagcgagaaaagtgaaaagtgcatacacacacac--cagttgagc |
4067201 |
T |
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| Q |
121 |
aatggatttggggaagaggtggtggtgacgtgcgaaggaatcttgatgaataggagctttggtttgaaagtgaaaatgtgagagaaccttacgatcaggt |
220 |
Q |
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| T |
4067202 |
aatggatttggggaagagatggtggtgacgtgcgaaggaatcttgatgaataggagctttggtttgaaagtgaaaatgtgagagaaccttacgatcaggt |
4067301 |
T |
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| Q |
221 |
aagggtttaagtaacaactcctcagaaaattcttcttctactacttttgccgaagacgatgatagaatcattgaaaaaaggagaatgaaagagagaatcg |
320 |
Q |
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| T |
4067302 |
aagggtttaagtaacaactcctcagaaaattcttcttctactacttttgctgaagacgatgatagaatcattgaaaaaaggagaatgaaagagagaatcg |
4067401 |
T |
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| Q |
321 |
ttgctggagcaaaagtcatcgttgcttgctaactttggaactctgctgtctgtttgagtagtggtgtgtacagactactaata |
403 |
Q |
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| T |
4067402 |
ttgctggagcaaaagtcatcgttgcttgctaactttggaactctgctgtctgtttgagtagtggtgtgtacagactaataata |
4067484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 116 - 265
Target Start/End: Original strand, 4062591 - 4062743
Alignment:
| Q |
116 |
tgagcaatggatttggggaagaggtggtggtgacgtgcgaaggaatcttgatgaataggag---ctttggtttgaaagtgaaaatgtgagagaaccttac |
212 |
Q |
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| T |
4062591 |
tgagaaatggatttggggaagagatggtgatgacgggcgaaggagtcttcatgaataggaggagcttcggtttggaaatgaaaatgcgcgagaactttgc |
4062690 |
T |
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| Q |
213 |
gatcaggtaagggtttaagtaacaactcctcagaaaattcttcttctactact |
265 |
Q |
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| T |
4062691 |
gatctggtaggggtttaagtagcaattcctctgaaaattcttcttctgctact |
4062743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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