View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14965_high_12 (Length: 356)
Name: NF14965_high_12
Description: NF14965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14965_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 3155825 - 3155498
Alignment:
| Q |
1 |
tagcacatcggtaacacttttttgtagtgttaattagatattctttgtgcataattatatataggctaatcaaattctaacgtaagatattgattaaact |
100 |
Q |
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| T |
3155825 |
tagcacatcggtaacacttttttgtagtgttaattagatattctttgtgcataattatatataggctaatcaaattctaacgtaagatattgattaaact |
3155726 |
T |
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| Q |
101 |
nnnnnnngactcgtactatatcatacattatcaacactttaaattgagcaaatctattttttatcaagtaaaaccaatttaacaaccacacgttaccctt |
200 |
Q |
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| T |
3155725 |
aaaaaaagactcgtactatatcatacattatcaacactttaacttgagcaaatctattttttatcaagtaaaaccaatttaacaatcacacgt------- |
3155633 |
T |
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| Q |
201 |
agatccactccattttacattcatttatttagatttgcttttcgttttgtttcnnnnnnncaagtatgcgtcaatttcacgtggtaggtttagtcgtgca |
300 |
Q |
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| T |
3155632 |
---tccactccattttacgttcatttatttagatttgcttttcgttttgtctcaaaaaaacaagtaagcgtcaatttcacgtggtaggtttagtcgtgca |
3155536 |
T |
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| Q |
301 |
taccatttgcacatactcattgtcacgtactccttttt |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
3155535 |
taccatttgcacatactcattgtcacgtactccttttt |
3155498 |
T |
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