View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14965_high_13 (Length: 344)
Name: NF14965_high_13
Description: NF14965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14965_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 14 - 328
Target Start/End: Complemental strand, 2696194 - 2695878
Alignment:
| Q |
14 |
acctgtgtttatgcatggtttctttagattaggtgcttgatgaggaggtagatgaagttgaaacagtgccaattatctatgtggacacggatgatagtga |
113 |
Q |
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| T |
2696194 |
acctgtgtttatgcatggtttcttttgaataggtgcttgatgaggaggtagatgaagttgaaacagtgccaattatctatgtggacacggatgatagtga |
2696095 |
T |
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| Q |
114 |
aagagaatccgaggatgccatggacaccgacaaagatagcaaagatggggaactatcagatgaagcatttgataatcttagtgacgttgaaggtagtgat |
213 |
Q |
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| T |
2696094 |
aagagaatccgaggatgccatggacaccgacaaagatagcaaagatggggaactatcagatgaagcatttgataatctaagtgacgttgaaggtagtgat |
2695995 |
T |
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| Q |
214 |
ggtatgatggaagattaatgatgtcgcctgtacgcgtttttggttcttttcataacatgtcataccgtt--gtcccagctattagcaattgataacattg |
311 |
Q |
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| T |
2695994 |
ggtatgatggaagattaatgatgtcgcctgtacgtgtttttggttcttttcataacatgtcataccattaagtcccagctattagcaattgataacattg |
2695895 |
T |
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| Q |
312 |
tagtagatctttgaaac |
328 |
Q |
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| T |
2695894 |
tagtagatctttgaaac |
2695878 |
T |
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