View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14965_high_14 (Length: 344)
Name: NF14965_high_14
Description: NF14965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14965_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 11 - 329
Target Start/End: Original strand, 10751796 - 10752119
Alignment:
| Q |
11 |
cacagaagatgatcggaatgagtgttgcgagcatgtgcgaagctgatgtaagatggccttcttatgcatacaatatacaaggtgaatcaaatggtgcaat |
110 |
Q |
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| T |
10751796 |
cacagaagatgatcggaatgagtgtcgcgagcatgtgcgaagctgatgtaagatggccttcttatgcatacaatatacaaggtgaatcaaatggtgcaat |
10751895 |
T |
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| Q |
111 |
gagatggattacaaatatgtctgaatcaagtcttcaaacaataagctatggcaccaatcatatctatgattgcaagggtcatatttaattttctgcttct |
210 |
Q |
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| T |
10751896 |
gagatggattacaaatatgtctgaatcaagtcttcaaacaataagctatggcaccaatcatatctatgattgcaagggtcatatttaattttctgcttct |
10751995 |
T |
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| Q |
211 |
gacataaaattttgagtagtttagtttaacagcctgattattttgtctacacatttttcacttccagagtttgattagcacacttaatagat-----agt |
305 |
Q |
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| T |
10751996 |
gacataaaattttgagtagtttagtttaacggcctgattattttgtctacacatttttcacttccagagtttgattagcacacttcatagatggtaaagt |
10752095 |
T |
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| Q |
306 |
aaagcatatctacaatcaatgaat |
329 |
Q |
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| T |
10752096 |
aaagcatatctacaatcaatgaat |
10752119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 54 - 164
Target Start/End: Original strand, 32561286 - 32561396
Alignment:
| Q |
54 |
tgatgtaagatggccttcttatgcatacaatatacaaggtgaatcaaatggtgcaatgagatggattacaaatatgtctgaatcaagtcttcaaacaata |
153 |
Q |
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|||||||||||||||||||| |||||| |||||| |||| |||| |||||| | ||||||||| |||||||||||||||| ||||| ||||| | || |
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| T |
32561286 |
tgatgtaagatggccttcttttgcatataatataaaaggagaattgaatggtcctatgagatgggttacaaatatgtctgattcaagccttcatgctatc |
32561385 |
T |
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| Q |
154 |
agctatggcac |
164 |
Q |
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| T |
32561386 |
agctatggcac |
32561396 |
T |
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