View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14965_high_18 (Length: 322)
Name: NF14965_high_18
Description: NF14965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14965_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 39486576 - 39486268
Alignment:
| Q |
1 |
tgtgtagacatcgacatcgtcatctgtggtgtgtgggaatttgatgaccaagatggttattcggagacggttatcacggttgattagaagctttgcaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39486576 |
tgtgtagacatcgacatcgtcatctgtggtgtgtgggaatttgatgaccaagatggttattcggagacggttatcacggttgattagaagctttgcaaat |
39486477 |
T |
|
| Q |
101 |
tcaagggtggaaactagatgaccaacaccaggtgaagggataatcaccacttctgctttcttcatcttggatggatatacacttactctgtgagtgactg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39486476 |
tcaagggtggaaactagatgaccaacaccaggtgaagggataatcaccacttctgctttcttcatcttggatggatatacacttactctgtgagtgactg |
39486377 |
T |
|
| Q |
201 |
ttttttgaattgtttgatattcctgag-nnnnnnnnnnnatatatgactaggaatagtgtagagaattattagtatgattattgaaggggtgtttgagtt |
299 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39486376 |
ttttttgaattgtttgatattcctgagttttttttttatatatatgactaggaatagtgtagagaattattagtatgattattgaaggggtgtttgagtt |
39486277 |
T |
|
| Q |
300 |
gaagtatgt |
308 |
Q |
| |
|
||||||||| |
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|
| T |
39486276 |
gaagtatgt |
39486268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 23 - 172
Target Start/End: Original strand, 39458368 - 39458517
Alignment:
| Q |
23 |
tctgtggtgtgtgggaatttgatgaccaagatggttattcggagacggttatcacggttgattagaagctttgcaaattcaagggtggaaactagatgac |
122 |
Q |
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||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39458368 |
tctgttgtgtgtggaaatttcatgaccaagatagttattcggagacggttatcacggttgattagaagctttgcaaattcgagggtggaaactagatgac |
39458467 |
T |
|
| Q |
123 |
caacaccaggtgaagggataatcaccacttctgctttcttcatcttggat |
172 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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|
| T |
39458468 |
caacaccaggtgaagagataatcaccacttctgctttcttcatcctggat |
39458517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 39 - 172
Target Start/End: Complemental strand, 39480452 - 39480319
Alignment:
| Q |
39 |
atttgatgaccaagatggttattcggagacggttatcacggttgattagaagctttgcaaattcaagggtggaaactagatgaccaacaccaggtgaagg |
138 |
Q |
| |
|
|||| |||||||| | |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39480452 |
atttcatgaccaaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagg |
39480353 |
T |
|
| Q |
139 |
gataatcaccacttctgctttcttcatcttggat |
172 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
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|
| T |
39480352 |
gataatcaccacttctgctttcttcatcctggat |
39480319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 23 - 165
Target Start/End: Original strand, 39464608 - 39464750
Alignment:
| Q |
23 |
tctgtggtgtgtgggaatttgatgaccaagatggttattcggagacggttatcacggttgattagaagctttgcaaattcaagggtggaaactagatgac |
122 |
Q |
| |
|
|||| ||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| |
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| T |
39464608 |
tctgcggtttgtgggagtttgatgactaagatggttattcggagacggttatcacggttgattagaagcttcgcaaactcaagggcagaaactagatgac |
39464707 |
T |
|
| Q |
123 |
caacaccaggtgaagggataatcaccacttctgctttcttcat |
165 |
Q |
| |
|
| ||| | || ||||||||| ||| ||||||||||||||||| |
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| T |
39464708 |
ctacagcgggaaaagggataaacactacttctgctttcttcat |
39464750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 26 - 165
Target Start/End: Complemental strand, 39454731 - 39454592
Alignment:
| Q |
26 |
gtggtgtgtgggaatttgatgaccaagatggttattcggagacggttatcacggttgattagaagctttgcaaattcaagggtggaaactagatgaccaa |
125 |
Q |
| |
|
|||| |||||| ||||||| ||| || | ||||||||||||||||||||||||||||||||||| || || || |||||||||||||||| ||| |||| |
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| T |
39454731 |
gtggcgtgtggaaatttgaggactaaaacagttattcggagacggttatcacggttgattagaagtttcgcgaactcaagggtggaaactaaatggccaa |
39454632 |
T |
|
| Q |
126 |
caccaggtgaagggataatcaccacttctgctttcttcat |
165 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||| |
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|
| T |
39454631 |
caccaggagaagggataaacaccacttctgctttcttcat |
39454592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 32 - 169
Target Start/End: Complemental strand, 39451086 - 39450949
Alignment:
| Q |
32 |
tgtgggaatttgatgaccaagatggttattcggagacggttatcacggttgattagaagctttgcaaattcaagggtggaaactagatgaccaacaccag |
131 |
Q |
| |
|
|||||||||||||| || || | |||| |||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| | ||||||| |
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|
| T |
39451086 |
tgtgggaatttgataactaaaacagttactcggagacggttatcacgattgattagaagcttcgcgaattcaagggtggaaactagatggctcacaccag |
39450987 |
T |
|
| Q |
132 |
gtgaagggataatcaccacttctgctttcttcatcttg |
169 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||| |
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| T |
39450986 |
gaaaagggataaacaccacttctgctttcttcatcttg |
39450949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 41 - 166
Target Start/End: Original strand, 43312605 - 43312730
Alignment:
| Q |
41 |
ttgatgaccaagatggttattcggagacggttatcacggttgattagaagctttgcaaattcaagggtggaaactagatgaccaacaccaggtgaaggga |
140 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||| |||| ||| || ||||| || ||||||| |
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| T |
43312605 |
ttgatgaccaagacggttacacggagacggttatcacggttgatgagaagcttagcaaactcaagggtggatactaaatgtcccacacctggagaaggga |
43312704 |
T |
|
| Q |
141 |
taatcaccacttctgctttcttcatc |
166 |
Q |
| |
|
||| |||||||||| |||||||||| |
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|
| T |
43312705 |
taaacaccacttctagtttcttcatc |
43312730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 171
Target Start/End: Complemental strand, 39472131 - 39471983
Alignment:
| Q |
23 |
tctgtggtgtgtgggaatttgatgaccaagatggttattcggagacggttatcacggttgattagaagctttgcaaattcaagggtggaaactagatgac |
122 |
Q |
| |
|
|||||| |||||||||||||||| || || | |||||||||||||||||||||||||||||||||||||| ||||| || || | ||||||| ||||| |
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|
| T |
39472131 |
tctgtgatgtgtgggaatttgataactaaaacagttattcggagacggttatcacggttgattagaagcttcgcaaactcgagagcagaaactatatgac |
39472032 |
T |
|
| Q |
123 |
caacaccaggtgaagggataatcaccacttctgctttcttcatcttgga |
171 |
Q |
| |
|
| || | || |||||| || ||||||||||||||||||||||||||| |
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|
| T |
39472031 |
cctcagccggaaaagggacaaacaccacttctgctttcttcatcttgga |
39471983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 59 - 214
Target Start/End: Complemental strand, 39460309 - 39460150
Alignment:
| Q |
59 |
attcggagacggttatcacggttgattagaagctttgcaaattcaagggtggaaactagatgaccaacaccaggtgaagggataatcaccacttctgctt |
158 |
Q |
| |
|
|||||||| || |||||||||||| ||||||||||||| || |||||||||||| ||||||| | ||| || ||||||||| ||| |||||||||| |
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|
| T |
39460309 |
attcggaggcgcttatcacggttggttagaagctttgcgaactcaagggtggaatctagatggctcggaccgggaaaagggataaacacaacttctgctt |
39460210 |
T |
|
| Q |
159 |
tcttcatcttgga----tggatatacacttactctgtgagtgactgttttttgaattgtt |
214 |
Q |
| |
|
||||||||||||| |||||||| |||||||||| ||| |||||||||||||||||| |
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|
| T |
39460209 |
tcttcatcttggagcacaggatatacccttactctgtaagttactgttttttgaattgtt |
39460150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 172
Target Start/End: Complemental strand, 39475594 - 39475452
Alignment:
| Q |
30 |
tgtgtgggaatttgatgaccaagatggttattcggagacggttatcacggttgattagaagctttgcaaattcaagggtggaaactagatgaccaacacc |
129 |
Q |
| |
|
|||||||||||||||| || || | |||| |||||||||||||||||| |||||||||||||| |||| ||||| ||||||| |||||| | | ||| |
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|
| T |
39475594 |
tgtgtgggaatttgataactaaaacagttactcggagacggttatcacgattgattagaagcttcacaaactcaagtgtggaaattagatggctcagacc |
39475495 |
T |
|
| Q |
130 |
aggtgaagggataatcaccacttctgctttcttcatcttggat |
172 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||||| |
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|
| T |
39475494 |
gggaaaagggataaacaccacttctgctttcttcatcttggat |
39475452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 171
Target Start/End: Original strand, 39470837 - 39470979
Alignment:
| Q |
29 |
gtgtgtgggaatttgatgaccaagatggttattcggagacggttatcacggttgattagaagctttgcaaattcaagggtggaaactagatgaccaacac |
128 |
Q |
| |
|
|||||||||||||| ||||| |||| ||||||| ||| ||||||||| |||||||||||||||| || || || | || |||||||||||||| ||| |
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|
| T |
39470837 |
gtgtgtgggaatttcatgactaagacagttattcagaggcggttatcatggttgattagaagcttggcgaactctaaggcagaaactagatgacctacag |
39470936 |
T |
|
| Q |
129 |
caggtgaagggataatcaccacttctgctttcttcatcttgga |
171 |
Q |
| |
|
| || ||||||||| ||||||||| |||||||||| ||||| |
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|
| T |
39470937 |
cgggaaaagggataaacaccacttccactttcttcatgttgga |
39470979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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