View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14965_high_23 (Length: 264)
Name: NF14965_high_23
Description: NF14965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14965_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 9122333 - 9122177
Alignment:
| Q |
1 |
tgggaggctctgtggaaagatattattggagcgagatatgcgaaaaggtctatgtgggatcatcgcggggggagggcgataggtttaagaggtgtctc-a |
99 |
Q |
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| T |
9122333 |
tgggaggctctgtggaaagatattattggagcgagatatgcaaaaaggtctatgtgggatcatcgcggggggagggtgataggtttaagaggtgtctcaa |
9122234 |
T |
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| Q |
100 |
actggtggaaaaaggtctccttattggaaacaagccagcctgagtctactgattggt |
156 |
Q |
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| T |
9122233 |
actggtggaaaaagatgtccttattggaaacaagtcagcctgagtctactaattggt |
9122177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 199
Target Start/End: Original strand, 5219660 - 5219775
Alignment:
| Q |
85 |
ttaagaggtgtctcaa-ctggtggaaaaaggtctccttattggaaacaagccagcctgagtctactgattggttctctaacaatatcctcacgaaggtta |
183 |
Q |
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| T |
5219660 |
ttaagaggtgtctcaaactagtggaaagagatctccttattgggatcgagttagcctgagtctactaattggttctctgaaagtatcctcaagaaggtta |
5219759 |
T |
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| Q |
184 |
gagattgtcgatctac |
199 |
Q |
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||||||| ||||||| |
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| T |
5219760 |
tagattgttgatctac |
5219775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 12545844 - 12545662
Alignment:
| Q |
17 |
aagatattattggagcgagatatgcgaaaaggtctatgtgggatcatcgcggggggagggcgataggtttaagaggtgtctcaa-ctggtggaaaaaggt |
115 |
Q |
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| T |
12545844 |
aagatattattggagtgagatatgtgaaagggtctatgtggaatcatcgtagggggcaggcgatgggtttaagatgtatctgaaactggtggaaagtgat |
12545745 |
T |
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| Q |
116 |
ctccttattggaaacaagccagcctgagtctactgattggttctctaacaatatcctcacgaaggttagagattgtcgatcta |
198 |
Q |
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| T |
12545744 |
ctccttattgaaaacaagtcaacctgagcctactgattggttatctgatagtatgctcaggaaggttagagatggtcgatcta |
12545662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 13956127 - 13956351
Alignment:
| Q |
20 |
atattattggagcgagatatgcgaaaaggtctatgtgggatcatcgcggggggagggcgataggtttaagaggtgtctcaactggtggaaaaaggtctcc |
119 |
Q |
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| T |
13956127 |
atattattggagcaagatatttgaaagggcttatgtgagatcatcatggggggcacacggtgggtttaagaggtgtca-aactggtgcaaggagatctcc |
13956225 |
T |
|
| Q |
120 |
ttattggaaacaagccagcctgagtctactgattggttctctaacaatatcctcacgaaggttagagattgtcgatctacgannnnnnnaaaaggtccct |
219 |
Q |
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||||||| |||| | ||| || |||||| ||||||||||||| | | ||| |||| || ||||||||| |||||||||| | ||||| ||||| |
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| T |
13956226 |
ttattgggaacatgtcagtctcagtctattgattggttctctgatagtatactcaaaaatgttagagatggtcgatctacaaatttactaaaagatccct |
13956325 |
T |
|
| Q |
220 |
agttgggtgttattcctttgagaatt |
245 |
Q |
| |
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|||||| | |||||||||||||||| |
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| T |
13956326 |
ggttgggagctattcctttgagaatt |
13956351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 126
Target Start/End: Original strand, 2487734 - 2487858
Alignment:
| Q |
3 |
ggaggctctgtggaaagatattattggagcgagatatgcgaaaaggtctatgtgggatcatcgcggggggagggcgataggtttaagaggtgtctc-aac |
101 |
Q |
| |
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||||||| |||||||||||||||| ||||| |||||| |||| ||||| || |||||| | |||||| ||||| | ||||||||||||||| ||| |
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| T |
2487734 |
ggaggctttgtggaaagatattataggagccagatatctgaaagggtctcaatgtgatcattgtggggggcgggcgggggttttaagaggtgtctcaaac |
2487833 |
T |
|
| Q |
102 |
tggtggaaaaaggtctccttattgg |
126 |
Q |
| |
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|||||||| || |||||||||||| |
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| T |
2487834 |
tggtggaatgagatctccttattgg |
2487858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 186
Target Start/End: Original strand, 30869162 - 30869264
Alignment:
| Q |
85 |
ttaagaggtgtctcaa-ctggtggaaaaaggtctccttattggaaacaagccagcctgagtctactgattggttctctaacaatatcctcacgaaggtta |
183 |
Q |
| |
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||||||| |||||||| |||||||||| || | |||||||||| | |||| || |||| || |||||||||||||||||| | |||||||| ||| |||| |
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| T |
30869162 |
ttaagagatgtctcaaactggtggaaagagatatccttattgggatcaagtcaacctgggtttactgattggttctctaaaagtatcctcatgaatgtta |
30869261 |
T |
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| Q |
184 |
gag |
186 |
Q |
| |
|
||| |
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| T |
30869262 |
gag |
30869264 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 7809161 - 7809117
Alignment:
| Q |
2 |
gggaggctctgtggaaagatattattggagcgagatatgcgaaaa |
46 |
Q |
| |
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|||||| | ||| ||||||||||||||||||||||||||| |||| |
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| T |
7809161 |
gggaggttttgttgaaagatattattggagcgagatatgcaaaaa |
7809117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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